PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp_un0030_004 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 207aa MW: 22980.8 Da PI: 7.0978 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.9 | 7.9e-20 | 94 | 128 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C tt+TplWR+gp g+k+LCnaCG++++k+++ Tp_un0030_004 94 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 128 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 2.57E-13 | 88 | 128 | No hit | No description |
PROSITE profile | PS50114 | 13.455 | 88 | 124 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.1E-19 | 88 | 140 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.9E-16 | 92 | 128 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.54E-13 | 93 | 125 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 94 | 119 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.8E-17 | 94 | 128 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 207 aa Download sequence Send to blast |
MMGYQTNPNF SMFFSSENED QDHHHYDPYN DLSSSTSVDC TLSLGTPSTR LDEHRRFSNA 60 NANNISGDFF FHGGNAKTTS YKKGGSDHNV TRRCASCDTT STPLWRNGPK GPKSLCNACG 120 IRFKKEERRA TARNSITSGG GSSAAEIPAE NSYNGVGNYY SHHHHYASSP PSWAHQNTQR 180 VPYYSPAPEM EYPFVDDVTA ASFLSWN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00110 | ampDAP | Transfer from AT2G18380 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002886168.1 | 1e-131 | GATA transcription factor 20 | ||||
Swissprot | Q9ZPX0 | 1e-119 | GAT20_ARATH; GATA transcription factor 20 | ||||
TrEMBL | A0A1J3HL02 | 1e-132 | A0A1J3HL02_NOCCA; GATA transcription factor 20 (Fragment) | ||||
STRING | Al_scaffold_0003_3815 | 1e-131 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6159 | 17 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G18380.1 | 1e-119 | GATA transcription factor 20 |
Publications ? help Back to Top | |||
---|---|---|---|
|