PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g34230 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 235aa MW: 27081.6 Da PI: 9.0269 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64 | 1.6e-20 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + ks qvtfskRr g++KKA+EL++LC++++++i+fs+ gk++ + Tp7g34230 17 KKKSSLQVTFSKRRFGLFKKASELCTLCGTKILMIVFSPGGKVFSF 62 568888*************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.974 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 8.6E-29 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.96E-23 | 7 | 92 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-16 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-22 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-16 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-16 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVRNGKGRQR IEITKMKKKS SLQVTFSKRR FGLFKKASEL CTLCGTKILM IVFSPGGKVF 60 SFGHPNVRDL VYHLSGDNQN PHFLHQYNNN LLLVESRPDE NIERLNEKLT EVTAQEEEER 120 KKRKQLDAMR VTREQQGNWY EKDVKELDMN QTNHLISALL DVKRQLVSEI LEQSQMNVSQ 180 HYLGESSSNG GHAGGLDLFD QRRMLDLNAF DNNPNMLPPN YGPSFEYHNN GANNM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g34230 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411985.1 | 1e-108 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | V4ML36 | 1e-107 | V4ML36_EUTSA; Uncharacterized protein | ||||
STRING | XP_006411985.1 | 1e-108 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14294 | 10 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 3e-92 | M-type_MADS family protein |