PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g34210 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB_related | ||||||||
Protein Properties | Length: 79aa MW: 9150.03 Da PI: 8.959 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.2 | 1e-09 | 11 | 55 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT E +l+ +a + + + +W+ +ar +g g+++++++ ++ Tp7g34210 11 SWTRKENKLFERALAIYDQDtpdRWHNVARAVG-GKSAEEVRRHYE 55 6*****************99*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 11.289 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-9 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.36E-14 | 11 | 65 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.5E-6 | 11 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.9E-8 | 11 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.44E-7 | 12 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
MASNSMSSNA SWTRKENKLF ERALAIYDQD TPDRWHNVAR AVGGKSAEEV RRHYELLIRD 60 VNDIESGRYP HPNYRSNGN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-30 | 1 | 78 | 1 | 77 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g34210 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189549 | 2e-93 | AC189549.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005C21, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411987.1 | 2e-52 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 2e-45 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A1J3D1Q8 | 1e-51 | A0A1J3D1Q8_NOCCA; Protein RADIALIS-like 3 (Fragment) | ||||
TrEMBL | A0A1J3G2A2 | 1e-51 | A0A1J3G2A2_NOCCA; Protein RADIALIS-like 3 (Fragment) | ||||
TrEMBL | A0A1J3GCM1 | 1e-51 | A0A1J3GCM1_NOCCA; Protein RADIALIS-like 3 (Fragment) | ||||
TrEMBL | A0A1J3IEU7 | 1e-51 | A0A1J3IEU7_NOCCA; Protein RADIALIS-like 3 (Fragment) | ||||
STRING | XP_006411987.1 | 7e-52 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-33 | RAD-like 1 |