PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp7g33380 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | C2H2 | ||||||||
Protein Properties | Length: 252aa MW: 27659.2 Da PI: 5.5632 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 131 | 149 | 3 | 21 |
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C++Cg+ F+++ H+r Tp7g33380 131 CNICGREFRSWKAVFGHMR 149 ******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.59E-5 | 128 | 155 | No hit | No description |
Pfam | PF13912 | 3.0E-6 | 130 | 153 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 131 | 151 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MSNPEKMKVD DTEEAKEDSD EQWSDKESAM REIVLALPTL HISREIFGVE EEEARLNEQA 60 VFAAELVVAA AEEAVMKDKS DGKKKKKKVT RPRKTMKIND EAGGSGKGGD VKKLKKKTSE 120 LTNIPRGPPI CNICGREFRS WKAVFGHMRC HKDRNYQGFL PPPKFSAVAG RVVIPGPNSA 180 FVPVVAGGRS SGGFVADAGG SAPENENGRG AVIDLNVNPV EEEDQKMNET ETIAKFDLNK 240 SPPKDEYEED KT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp7g33380 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013592252.1 | 1e-99 | PREDICTED: zinc finger protein ZAT9 | ||||
Refseq | XP_013649612.2 | 4e-99 | uncharacterized protein LOC106354258 | ||||
TrEMBL | A0A0D3A1Q6 | 3e-98 | A0A0D3A1Q6_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6ESB1 | 3e-98 | A0A3P6ESB1_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g006320.1 | 4e-99 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5875 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35610.1 | 2e-58 | C2H2 family protein |