PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g19130
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 254aa    MW: 28115.7 Da    PI: 6.6698
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g19130genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof100.21.3e-312177561
     zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                + cprC+s+ntkf yynny++sqPry Ck+Cr yWt+GGalrnvP+Gg+ rk +++
  Tp7g19130 21 PRVCPRCNSNNTKFRYYNNYTVSQPRYNCKNCRGYWTHGGALRNVPIGGSGRKPERT 77
               678**************************************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-211676IPR003851Zinc finger, Dof-type
PfamPF027012.3E-282275IPR003851Zinc finger, Dof-type
PROSITE profilePS5088425.4432276IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MENLSVLVKG DNQVSEEKPP PRVCPRCNSN NTKFRYYNNY TVSQPRYNCK NCRGYWTHGG  60
ALRNVPIGGS GRKPERTRTD QVSVSQVVSV EIQQVNHHQP FLHVQETNEF VRSFGSSSSS  120
AIVVGNNSGS FPEIHGDMVL PIRSFPPMDG SDFHDGPFQQ DQYDVRSNGL IGNPLINQSI  180
GGSGFMSSDH NGYRNQDDGN EWNQSFNNTM NMNHNASTSG SRGSSGIDHM EKNNGEVINN  240
CVLSSSYHLE TNGP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g19130
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627684.11e-114PREDICTED: dof zinc finger protein DOF4.4-like
SwissprotQ9SUA92e-70DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A0D3BKT31e-113A0A0D3BKT3_BRAOL; Uncharacterized protein
STRINGBo3g162810.11e-114(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.11e-52Dof-type zinc finger domain-containing protein