PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g19110
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 490aa    MW: 54439.5 Da    PI: 8.312
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g19110genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof107.47.6e-342177561
     zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                + cprC+s+ntkfCyynny++sqPry Ck+Crr+Wt+GGalrnvP+Gg+ rk k++
  Tp7g19110 21 PRVCPRCNSNNTKFCYYNNYTVSQPRYNCKNCRRFWTHGGALRNVPIGGSGRKPKRT 77
               678**************************************************9987 PP
2zf-Dof103.71.1e-32273329561
     zf-Dof   5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                 + cprC+s+ntkf yynny++sqPry Ck+CrryWt+GGalrnvP+Gg+ rk k++
  Tp7g19110 273 PRVCPRCNSNNTKFRYYNNYTVSQPRYNCKNCRRYWTHGGALRNVPIGGSGRKPKRT 329
                678**************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-241576IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.3072276IPR003851Zinc finger, Dof-type
PfamPF027013.0E-292276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
ProDomPD0074785.0E-22268328IPR003851Zinc finger, Dof-type
PROSITE profilePS5088426.478274328IPR003851Zinc finger, Dof-type
PfamPF027011.5E-28274328IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MENMSVFVKG YNQVLKEKPP PRVCPRCNSN NTKFCYYNNY TVSQPRYNCK NCRRFWTHGG  60
ALRNVPIGGS GRKPKRTRTD QVSVEIQQVN HHQPFLHVQE TNEFVGSFGG SSSSSSVIAV  120
GNHFGSLPEI HGDMVLPNRS FPPMDRSDFH DRPFQQDHYD VGSNGLIGNP LVNQSIGGSG  180
LVSSDHNGYH NQDDGNKWNQ SFNNNMNMNH NASTSGSRGS SGTDHMEKNN GEIRNNCVLS  240
SSYHLETHAL EKNGELECLV KGDNQVSEEK PPPRVCPRCN SNNTKFRYYN NYTVSQPRYN  300
CKNCRRYWTH GGALRNVPIG GSGRKPKRTR TDQVSVSQVV SVEIQQVDHH QPFLHVQETN  360
EFVGSFGGSS SSSVIAVGNH LGSVPESHSD MVLPNQNHYD VGSNGLIGNP LINQSIGGSG  420
FVSSDHNGYR NQDDENKWNQ SFNNNMKRNQ NASNSGSRGS SGTDHMEKNN GEIINNCVLS  480
SSYHLERHGP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g19110
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013627684.11e-112PREDICTED: dof zinc finger protein DOF4.4-like
SwissprotQ9SUA91e-69DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLA0A0D3BKT31e-111A0A0D3BKT3_BRAOL; Uncharacterized protein
STRINGBo3g162810.11e-112(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.12e-64Dof-type zinc finger domain-containing protein