PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp7g19080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 253aa MW: 28695.8 Da PI: 9.3076 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 112.5 | 1.9e-35 | 21 | 77 | 5 | 61 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + cprC+s+ntkfCyynnyslsqPry Ck+CrryWt+GGalrn+P+Gg+ r+ k++ Tp7g19080 21 PRVCPRCNSDNTKFCYYNNYSLSQPRYSCKNCRRYWTHGGALRNIPIGGSGRRTKRA 77 678**********************************************99999875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-24 | 16 | 76 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.9E-31 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.941 | 22 | 76 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 24 | 60 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MENLSVLVRG GHQMNEEKPP PRVCPRCNSD NTKFCYYNNY SLSQPRYSCK NCRRYWTHGG 60 ALRNIPIGGS GRRTKRARIE QPSVSQLVSV EIQQVNHHQP FLHVQETNEF VGSFDGSSSS 120 SALFVGNHFG SLPETHGDMV LPIRSFPPMD LFDFSNGPFH KGYYDVGSND LVGNPLVNQS 180 IAEYVNNYNS YRINQEAQNK RNQSFNNTMN MNHNASTSGS RGYSGTDHMS KNNNKVRNKC 240 MFRSSYQLEK HGL |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp7g19080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC172878 | 2e-84 | AC172878.1 Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH069E01, complete sequence. | |||
GenBank | AC241020 | 2e-84 | AC241020.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039B11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013647345.1 | 1e-138 | dof zinc finger protein DOF4.4-like | ||||
Swissprot | Q9SUA9 | 2e-82 | DOF44_ARATH; Dof zinc finger protein DOF4.4 | ||||
TrEMBL | A0A3P5ZK04 | 1e-136 | A0A3P5ZK04_BRACM; Uncharacterized protein | ||||
STRING | Bra013493.1-P | 1e-136 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1602 | 17 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G21050.1 | 3e-82 | Dof-type zinc finger domain-containing protein |