PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp7g00120
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family Dof
Protein Properties Length: 232aa    MW: 26040.8 Da    PI: 8.2117
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp7g00120genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof113.77.9e-362481562
     zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
               +++cprC+s++tkfCyynnysl+qPry+Ck+CrryWt+GG+lr +PvGg++rknk+++
  Tp7g00120 24 NKNCPRCNSKHTKFCYYNNYSLTQPRYLCKTCRRYWTHGGSLRTIPVGGASRKNKTTT 81
               579***************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-22773IPR003851Zinc finger, Dof-type
PfamPF027012.9E-312579IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.3632579IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MDTAQWPQPT EEMERRKRSE EALNKNCPRC NSKHTKFCYY NNYSLTQPRY LCKTCRRYWT  60
HGGSLRTIPV GGASRKNKTT TRTSSKNKHF LPPLLPTLEK AKRHQDLASS QELQGISSNL  120
SSSSTSMAFP NAASSGFGLS YDFIRPALGF VSLDLDDPPN QEEDFNAATT TSEIRLPFES  180
LKPPSSSPSS NGGVRYNHSK IDTDDLAHDK EEGADRSSVF WTDMFGGESW QL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp7g00120
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K2BUI74e-42A0A2K2BUI7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11130.11e-41(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1964367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.15e-30Dof family protein