PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp6g12940
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family NAC
Protein Properties Length: 191aa    MW: 22631.2 Da    PI: 4.6841
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp6g12940genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.36.5e-32171381128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....k 96 
                lppGfrF+P de+lv eyL+kkv ++++++   ++e++ ++v+PwdL     +++ke+y+F+k+++++    rk r t sgyW++  + +ev+++     
  Tp6g12940  17 LPPGFRFDPDDEDLVFEYLAKKVLHRPMDF--DLPELRSCNVDPWDLL---GEKNKEVYYFVKKEERE----RKGRETLSGYWEECEE-EEVMESgdrsC 106
                79*************************999..49*************6...56789*******99875....899*********8866.66777646555 PP

        NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                ++l g +kt++fy g++p+g+ t W+m e+rl
  Tp6g12940 107 NHLEGRRKTFAFYIGKKPRGTITPWIMYEFRL 138
                666***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-346163IPR003441NAC domain
PROSITE profilePS5100533.80217164IPR003441NAC domain
PfamPF023657.2E-1918138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDISTQRFAM NGRSMRLPPG FRFDPDDEDL VFEYLAKKVL HRPMDFDLPE LRSCNVDPWD  60
LLGEKNKEVY YFVKKEERER KGRETLSGYW EECEEEEVME SGDRSCNHLE GRRKTFAFYI  120
GKKPRGTITP WIMYEFRLLS SRATRWSSSR GEVGKWRAVK VVVKEENEEE IEEDDQHASD  180
ESDGEEVVQS R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-191513915143NO APICAL MERISTEM PROTEIN
1ut4_B5e-191513915143NO APICAL MERISTEM PROTEIN
1ut7_A5e-191513915143NO APICAL MERISTEM PROTEIN
1ut7_B5e-191513915143NO APICAL MERISTEM PROTEIN
3swm_A6e-191513918146NAC domain-containing protein 19
3swm_B6e-191513918146NAC domain-containing protein 19
3swm_C6e-191513918146NAC domain-containing protein 19
3swm_D6e-191513918146NAC domain-containing protein 19
3swp_A6e-191513918146NAC domain-containing protein 19
3swp_B6e-191513918146NAC domain-containing protein 19
3swp_C6e-191513918146NAC domain-containing protein 19
3swp_D6e-191513918146NAC domain-containing protein 19
4dul_A5e-191513915143NAC domain-containing protein 19
4dul_B5e-191513915143NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp6g12940
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0151500.0BT015150.1 Arabidopsis thaliana At5g50820 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_199895.31e-117NAC domain containing protein 97
TrEMBLA0A178UQH21e-115A0A178UQH2_ARATH; NAC097
TrEMBLQ9FGQ11e-115Q9FGQ1_ARATH; NAC domain containing protein 97
STRINGAT5G50820.11e-116(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146661821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50820.11e-101NAC domain containing protein 97