PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g12170
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family LBD
Protein Properties Length: 245aa    MW: 26691.2 Da    PI: 7.8805
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g12170genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.85.2e-312103197
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                +C++C+vlr++C+++C+l+p++     +++q +++ +v+k+FG++ ++++++a+pe++ +++++sl+yeA+ r+ +Pv+Gavg++++++++++q+++e++
  Tp5g12170   2 SCNGCRVLRKGCSENCILRPCIqwiesAEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNICQAAVETV 101
                6*********************9998777889****************************************************************9998 PP

     DUF260  96 ll 97 
                l+
  Tp5g12170 102 LR 103
                76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.5231107IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-252101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIESAE AQGHATVFVA KFFGRAGLMS FISAVPESQC  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLRPI PELLTRGGGF  120
GGFPSPTSDE GTSEICTEML NDSGDRNTYH HCRFSTSRSR STASPPKRKR LASEQQQRPS  180
PELDLSLIPT FSIKTTPVKE ETRRPETPSM YSEESVTTAT FPDSTTGERF VRGGGETTKL  240
LNLFA
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g12170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738731e-131AB473873.1 Arabidopsis thaliana ASL40 mRNA for ASYMMETRIC LEAVES2-like 40 protein, complete cds.
GenBankAY0857611e-131AY085761.1 Arabidopsis thaliana clone 17840 mRNA, complete sequence.
GenBankBT0024491e-131BT002449.1 Arabidopsis thaliana putative protein (At3g49940) mRNA, complete cds.
GenBankBT0062871e-131BT006287.1 Arabidopsis thaliana At3g49940 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691297.11e-155LOB domain-containing protein 38-like
SwissprotQ9SN231e-136LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A3P5YEH01e-153A0A3P5YEH0_BRACM; Uncharacterized protein
STRINGBra036040.1-P1e-153(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-120LOB domain-containing protein 38