PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g11330
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ZF-HD
Protein Properties Length: 244aa    MW: 27823.9 Da    PI: 10.2776
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g11330genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.61.6e-2951105358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                  +++YkeC+kNhAa +Ggh+vDGC+Efmp  geeg  +alkCaAC+CHR+FHR+ev 
    Tp5g11330  51 AAKYKECQKNHAALTGGHVVDGCCEFMPG-GEEGMLSALKCAACNCHRSFHRKEVY 105
                  689*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.3E-2752104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-2253104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-2653104IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.25754103IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.54E-17164235IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-25169234IPR009057Homeodomain-like
PROSITE profilePS500718.778171235IPR001356Homeobox domain
TIGRFAMsTIGR015651.0E-25173230IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEHGGKCNAI TSTTKPHTNP DPKAKPGSDP SLPPFLAKKE NQKPITHSDQ AAKYKECQKN  60
HAALTGGHVV DGCCEFMPGG EEGMLSALKC AACNCHRSFH RKEVYGHRNS TQELISPAFY  120
CSSSSYQAMQ PRGVCRKGEI GRRTSSSSED MKKILSHRNL NINGNGLMMM RKKKRIRTKI  180
NEEQKEKMKE FAERLGWRMQ KKHDEEIDKF CRTVNLRRQV FKVWMHNNKQ AMKRNNGNTC  240
DLQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-181742291873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g11330
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013741295.11e-139zinc-finger homeodomain protein 7-like
SwissprotQ9SVL01e-126ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLA0A1J3GQM71e-138A0A1J3GQM7_NOCCA; Zinc-finger homeodomain protein 7
STRINGBo7g100590.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-124homeobox protein 28