PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g07830
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family bZIP
Protein Properties Length: 263aa    MW: 28558.5 Da    PI: 5.0342
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g07830genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.23.1e-12228261336
                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvk 36 
                ++kr+rr+ +NRe+ArrsR+RK++++ e  + v 
  Tp5g07830 228 DVKRARRMLSNRESARRSRRRKQEQMNEFDTQVP 261
                68*************************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.7E-8227260No hitNo description
PROSITE profilePS502179.278228263IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.51E-7229261No hitNo description
PfamPF001708.5E-10229262IPR004827Basic-leucine zipper domain
PROSITE patternPS000360233248IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MHIVFSVDDL TESFWPATAP VTSPGSVPAP TQNMADGMTR SQSEWAFQRL LKEMSGSDET  60
NAIERLPPPV QSELSLSTID EIADVVEIQK PPTQNHRLSA DDLGNRNRAR SSDPAGVDPN  120
QYHAILKSKL DLACAAVARR VATVKPEDSS VSGGNQKQSL PVGSRAQGSV VAQTSPAASS  180
VRVVPPTSTQ KKPDVPARQT TSISSRDDSD DDDLDGDTET ADNGDPTDVK RARRMLSNRE  240
SARRSRRRKQ EQMNEFDTQV PVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242249RRSRRRKQ
2244249SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'-ACGT-3' box, especially present in G-box-like motif (5'-CCACGTGGCC-3'), ABRE elements, of seed storage protein (SSP) encoding gene promoters (e.g. At2S and CRU3) and promotes their expression in seeds when in complex with ABI3 and BZIP53. {ECO:0000269|PubMed:12657652, ECO:0000269|PubMed:19261733, ECO:0000269|PubMed:19531597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp5g07830
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530610.0AK353061.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-B05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006403555.11e-118basic leucine zipper 25 isoform X1
RefseqXP_024013744.11e-120basic leucine zipper 25 isoform X2
SwissprotQ9M1G62e-93BZP25_ARATH; Basic leucine zipper 25
TrEMBLA0A1J3I3581e-125A0A1J3I358_NOCCA; Basic leucine zipper 25
STRINGXP_006403555.11e-117(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58482645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54620.22e-85basic leucine zipper 25
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Jain P, et al.
    A-ZIP53, a dominant negative reveals the molecular mechanism of heterodimerization between bZIP53, bZIP10 and bZIP25 involved in Arabidopsis seed maturation.
    Sci Rep, 2017. 7(1): p. 14343
    [PMID:29084982]
  4. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]