PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9751
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRF
Protein Properties Length: 414aa    MW: 47367.4 Da    PI: 8.3259
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9751genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.61.2e-2493136144
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                               d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Tp57577_TGAC_v2_mRNA9751  93 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 136
                               79***************************************987 PP
2QLQ57.15.5e-20842236
                       QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                              +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  Tp57577_TGAC_v2_mRNA9751  8 PFTPTQWQELEHQALIYKYMASGISIPPDLLLTIK 42
                              8******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009516.0E-11743IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.368843IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.5E-14841IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9893137IPR014977WRC domain
PfamPF088791.5E-2094136IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MNGRNRHPFT PTQWQELEHQ ALIYKYMASG ISIPPDLLLT IKRSYLDSSR LLPHHSQHCK  60
QALCVLVIKR GLLVYLHAVG WNYLPMGLGR KIDPEPGRCR RTDGKKWRCS KEAYPDSKYC  120
ERHMHRGKNR SRKPVEVLKT TTTNTDSAAA TSSILSMTKN SSFDPDHNTA ALNPTTHDST  180
YHYPQHSSYA SSHLNHSFLY HNPPSSRPNF SFQDNTSAAP MFLDSTGSSS HNNNNNTDCS  240
VCERFSFWYC HFLRNRYVYG LKEEVDEHAF FTEPSGTMRS LSASSMDDSW QLTPLTISSS  300
SSSKQRNCSG LSNDNEYSYL QLQSLSNNNN NSKQPQQQDQ RFYISGSEET FMKQEKEEPQ  360
KIFHRFFDEW PPKSSRNSWL DLDDKSSTTQ LSISIPTAHH DFTTFSSTNQ RDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9751
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150348e-63AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458421.20.0growth-regulating factor 1 isoform X1
TrEMBLA0A2K3NL990.0A0A2K3NL99_TRIPR; Growth-regulating factor 5-like protein
STRINGGLYMA13G16924.11e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-49growth-regulating factor 5