PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA9599 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 473aa MW: 52910.5 Da PI: 8.5784 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.3 | 1.3e-05 | 26 | 48 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Tp57577_TGAC_v2_mRNA9599 26 FVCEICNKGFQRDQNLQLHRRGH 48 89*******************88 PP | |||||||
2 | zf-C2H2 | 16.3 | 2.7e-05 | 102 | 124 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H++t+ Tp57577_TGAC_v2_mRNA9599 102 WKCDKCSKRYAVQSDWKAHQKTC 124 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.74E-8 | 25 | 48 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 25 | 48 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 7.4E-5 | 26 | 48 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 26 | 48 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 26 | 48 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 96 | 67 | 97 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.6E-5 | 90 | 123 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.74E-8 | 97 | 123 | No hit | No description |
SMART | SM00355 | 89 | 102 | 122 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MYFDEIDPSA EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTSA 60 EVKKKVYVCP EPSCVHHNPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKR YAVQSDWKAH 120 QKTCGTREYK CDCGTIFSRY YSYIQIVPSY FRAKFCFKYL CMRKELRRDS FITHRAFCDA 180 LTEENNRVNQ GLTSGMPPNL QNQMHDPISS MPLKPNSNTS SELNNEYDPK NSLKSPTQEH 240 VPTPFRSNNA CGGMFSTSAG ALFGGPKTLP PSSSSLQLSS NSFNYFNDNK TGGLICGSAQ 300 MSATALLQKA AQIGSTSSNS GNCNSSMMQK SFVSSMISPN HVSGPIMMNQ PSYEHFNPLN 360 HNDLTNMAGV SGGGAFTNQL FQNNTNDIGM FSQISMGNDQ SSGLMKNMAE SNQLVHDFLG 420 IGGSNSSLHE PQQQQRLEAL THQRLEIMND FHHHQHHLPH DDSVMEKSIW DV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-29 | 98 | 189 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 2e-29 | 98 | 189 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA9599 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC144504 | 0.0 | AC144504.14 Medicago truncatula clone mth2-34c9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024625586.1 | 0.0 | protein indeterminate-domain 2-like | ||||
Swissprot | Q9SCQ6 | 4e-97 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A2K3NBV6 | 0.0 | A0A2K3NBV6_TRIPR; Zinc finger protein NUTCRACKER-like | ||||
STRING | AES82109 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 3e-96 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA9599 |
Publications ? help Back to Top | |||
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