PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA9359
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 198aa    MW: 22147.5 Da    PI: 9.3479
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA9359genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.42.1e-241664149
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                              k+i+n++n qvtfskRr g++KKA+EL++LC+++va+++fs++gk + +
  Tp57577_TGAC_v2_mRNA9359 16 KKISNETNLQVTFSKRRSGLFKKASELCTLCGVDVALVVFSPSGKTFSF 64
                              68******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-34867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.791868IPR002100Transcription factor, MADS-box
CDDcd002651.28E-37976No hitNo description
SuperFamilySSF554558.37E-30985IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-211030IPR002100Transcription factor, MADS-box
PfamPF003192.9E-261764IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-213045IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-214566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MSSGRRGQGR QKIEMKKISN ETNLQVTFSK RRSGLFKKAS ELCTLCGVDV ALVVFSPSGK  60
TFSFGHPNVD TVIDRYFSQV LPQNNDTMQF IEARRSANVS ALNAHLTQIN NTLDDAKKHG  120
DELSHFLKEI KALLWWACPI SGMNRVELEF LKKALEELKN LVAQHVIGIS IQHAPTQFLI  180
HTLISTSNIF CYCSTHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-16994291MEF2 CHIMERA
6byy_B3e-16994291MEF2 CHIMERA
6byy_C3e-16994291MEF2 CHIMERA
6byy_D3e-16994291MEF2 CHIMERA
6bz1_A4e-16987280MEF2 CHIMERA
6bz1_B4e-16987280MEF2 CHIMERA
6bz1_C4e-16987280MEF2 CHIMERA
6bz1_D4e-16987280MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA9359
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496799.14e-93agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-52AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLA0A2K3M4V81e-145A0A2K3M4V8_TRIPR; Agamous-like mads-box protein agl62-like
STRINGXP_004496799.11e-92(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-51AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]