PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6881
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 433aa    MW: 49351.4 Da    PI: 8.4705
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6881genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.3e-1987132248
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                +WT+eEde l+++v+++G ++W+ Ia+ ++ gR +kqc++rw++ l
  Tp57577_TGAC_v2_mRNA6881  87 RSWTKEEDEALIELVRKYGFKRWSYIAKFIP-GRIGKQCRERWHNNL 132
                               68*****************************.************975 PP
2Myb_DNA-binding45.81.4e-14138181146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               +++WT+ E+ +l+ +++ +G++ W+ Iar ++ gR ++ +k++w++
  Tp57577_TGAC_v2_mRNA6881 138 KDAWTEKEESILAYYHRIYGSK-WAEIARVLP-GRNDNAIKNHWNS 181
                               679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.22E-63979IPR009057Homeodomain-like
SMARTSM007179.44282IPR001005SANT/Myb domain
CDDcd001670.00184679No hitNo description
PROSITE profilePS500905.4365680IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-45689IPR009057Homeodomain-like
PROSITE profilePS5129428.76681136IPR017930Myb domain
SuperFamilySSF466892.98E-3084179IPR009057Homeodomain-like
SMARTSM007171.0E-1785134IPR001005SANT/Myb domain
PfamPF002494.8E-1786132IPR001005SANT/Myb domain
CDDcd001672.42E-1688132No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2690139IPR009057Homeodomain-like
PROSITE profilePS5129417.405137187IPR017930Myb domain
SMARTSM007172.4E-13137185IPR001005SANT/Myb domain
PfamPF002496.2E-12138181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-19140186IPR009057Homeodomain-like
CDDcd001679.05E-10140180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
LKSSHHPDLL HLCLSSPNCN SDTCFLESTH VAGKVKSQIS STKGFWTDEE FTWMYNWSFT  60
AAYFPGRTDI ECFHRWQKVS DFDLGKRSWT KEEDEALIEL VRKYGFKRWS YIAKFIPGRI  120
GKQCRERWHN NLDPAIKKDA WTEKEESILA YYHRIYGSKW AEIARVLPGR NDNAIKNHWN  180
SSMKKKTSTS PIRHEVNVST SSFCTSLIKP ADDQSLIGIA SPQKSHWLKH NADNLPTRMI  240
IRNADNQTNF ADNLLRPVNL TNEMETVMGC KDHANSTFSV KHMNSYSDNS LDMFTTNMDC  300
FPSPSTVTCE AYKSPKWQQV SLLDSKFYAG NESDSPHLSY SKLANHVGRE SNDKSDVSPE  360
SVLRSLAMTY ENTPSIIRKR TSRKGCNAAD NGKSQTPSRI DFSTPEEGCV IGFDNLKRNQ  420
GFVPFLPRHA ME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C9e-555618728159MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-555618728159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6881
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU3263919e-38CU326391.2 Medicago truncatula chromosome 5 clone mth2-182c4, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611131.10.0transcription factor MYB3R-3
RefseqXP_024641046.10.0transcription factor MYB3R-3
TrEMBLA0A2K3NC420.0A0A2K3NC42_TRIPR; MYB domain protein 3r-5
STRINGAES940890.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.13e-63myb domain protein 3r-3