PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6854
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 345aa    MW: 39573.2 Da    PI: 9.7891
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6854genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-18140190256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Tp57577_TGAC_v2_mRNA6854 140 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 190
                               59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.90E-15139199No hitNo description
SMARTSM003803.3E-35140203IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-22140197IPR016177DNA-binding domain
PROSITE profilePS5103223.235140197IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-31140198IPR001471AP2/ERF domain
PRINTSPR003676.1E-10141152IPR001471AP2/ERF domain
PfamPF008471.4E-12141190IPR001471AP2/ERF domain
PRINTSPR003676.1E-10163179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MRKYREGQFV LFRTENRTEI RVGFXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXPSS FSNQSLNPSL  120
YSTISSSTSL LNPLDLKKKL YRGVRQRHWG KWVAEIRLPQ NRMRVWLGTY ETAEAAAYAY  180
DRAAYKLRGE YARLNFPNLK DPTKLGFGDS TKLNALKNSV DAKIQAICQK VKREKAKKIA  240
AKKMKKKNLE SDNKKEETEK INSSSCSSSS SSLPLSPSIF YEDWVNELFS PTVSEDGVWK  300
GENSNSPNSV STMVTEETEF EDCSLALARM PSFDPELIWE VLAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20137197263ATERF1
3gcc_A5e-20137197263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6854
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0337710.0CT033771.1 Medicago truncatula chromosome 5 clone mth2-15i14, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519928.14e-98ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-52ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A2K3PJJ71e-171A0A2K3PJJ7_TRIPR; Ethylene-responsive transcription factor erf061-like protein
STRINGXP_007158572.13e-92(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-40ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]