PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA6761
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 405aa    MW: 46146.1 Da    PI: 6.5321
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA6761genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.7e-131479148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..................TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..................kgRtlkqcksrwqkyl 48
                              rg W++eEde+l+++++ +G g+W+++++                     + R++k+c++rw +yl
  Tp57577_TGAC_v2_mRNA6761 14 RGLWSPEEDEKLINYITNYGHGCWSSVPKLAVyndsdkltliisktlivgLQRCGKSCRLRWINYL 79
                              788*************************************************************97 PP
2Myb_DNA-binding49.78.5e-1685127145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               rg+++++E  l++++++ lG++ W+ Ia++++ gRt++++k++w+
  Tp57577_TGAC_v2_mRNA6761  85 RGSFSPQEAALIIELHTILGNR-WAQIAKHLP-GRTDNEVKNFWN 127
                               899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-25682IPR009057Homeodomain-like
PROSITE profilePS5129412.284979IPR017930Myb domain
SuperFamilySSF466891.46E-2511126IPR009057Homeodomain-like
SMARTSM007175.0E-91381IPR001005SANT/Myb domain
PfamPF002491.6E-111479IPR001005SANT/Myb domain
CDDcd001672.57E-81779No hitNo description
PROSITE profilePS5129424.9380134IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2583134IPR009057Homeodomain-like
SMARTSM007174.4E-1584132IPR001005SANT/Myb domain
PfamPF002499.1E-1485128IPR001005SANT/Myb domain
CDDcd001678.55E-1187127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLINYIT NYGHGCWSSV PKLAVYNDSD KLTLIISKTL  60
IVGLQRCGKS CRLRWINYLR PDLKRGSFSP QEAALIIELH TILGNRWAQI AKHLPGRTDN  120
EVKNFWNSSI KKKLLSHDLV PSLTTFSDHI HCPTNVPMES FFPLFNDNPT LNNLDHHLYL  180
PINVPSPILQ DQVDIKNIID INNFNANFLH VHQNNPILPE ITIPLSNNIV PPSYDQLDTW  240
SLFHHLNPNI QENHQIIATK SEAATQNFNI VDDNFINPIP NTWHHLMELE PIVPKVCETI  300
KNDYVCSIPF SFSDSSQEHD HHHHHQVVNQ IDECYTDQQQ SIICPQDHHH HQIVAASNND  360
QVEYIDSLIM SSLPSSTTTS SSSPLSIYQP QDKILTKPIL PSSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27141347108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA6761
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1369553e-68AC136955.20 Medicago truncatula clone mth2-10p1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597573.11e-168transcription factor MYB26
TrEMBLG7IS441e-167G7IS44_MEDTR; Myb transcription factor
STRINGAES678241e-168(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30143168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.22e-76myb domain protein 26