PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5895
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 232aa    MW: 27403.9 Da    PI: 6.6766
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5895genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.1e-1959112356
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               k+ ++t+eq e Le+ F+++ +++ +++ +L+k+lgL+ rq+ vWFqNrRa++k
  Tp57577_TGAC_v2_mRNA5895  59 KKKRLTNEQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAVWFQNRRARWK 112
                               56779************************************************9 PP
2HD-ZIP_I/II119.12.3e-3858150193
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               ekk+rl++eq+++LE+sF+ee kL+p+rK++l++eLglqprq+avWFqnrRAR+ktkqlE+ y++Lk++++ +++e+++L++ev 
  Tp57577_TGAC_v2_mRNA5895  58 EKKKRLTNEQMESLESSFQEEIKLDPQRKMKLSKELGLQPRQIAVWFQNRRARWKTKQLEHLYDSLKHQFNVVSKEKQQLQDEVM 142
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelke 93 
                               +L++ lke
  Tp57577_TGAC_v2_mRNA5895 143 KLKAMLKE 150
                               ***99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.01E-1848116IPR009057Homeodomain-like
PROSITE profilePS5007117.4154114IPR001356Homeobox domain
SMARTSM003891.2E-1657118IPR001356Homeobox domain
PfamPF000461.4E-1659112IPR001356Homeobox domain
CDDcd000868.67E-1559115No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2060121IPR009057Homeodomain-like
PRINTSPR000313.6E-58594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000313.6E-594110IPR000047Helix-turn-helix motif
PfamPF021831.2E-7114148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEWNGNQRSF VPQPESSLSF LYNYNQTPYQ GMVEVKQQEW TETMFPEMEK MMKYGNQEKK  60
KRLTNEQMES LESSFQEEIK LDPQRKMKLS KELGLQPRQI AVWFQNRRAR WKTKQLEHLY  120
DSLKHQFNVV SKEKQQLQDE VMKLKAMLKE QGCSSSRMQC YYSEMSGEET ETVESTSEAA  180
LLCSNREVKG KDHNQFNIAE GNCFNLGDYN FNNSVPLLPY WPNVPHHNYQ P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106114RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5895
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1395251e-118AC139525.3 Medicago truncatula clone mth2-26o22, complete sequence.
GenBankAC1467881e-118AC146788.13 Medicago truncatula clone mth2-11a6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003590399.11e-143putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2K3MQC81e-163A0A2K3MQC8_TRIPR; Homeobox-leucine zipper protein ATHB-51-like
STRINGAES606501e-143(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33943466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-49homeobox 51