PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5483
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 624aa    MW: 71506.5 Da    PI: 5.0103
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5483genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.79.2e-5781351128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               lppGfrFhPtdeelv +yL+kk++g+k++l e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratksgyW
  Tp57577_TGAC_v2_mRNA5483   8 LPPGFRFHPTDEELVAYYLNKKINGHKIDL-EIIAEVDLYKCEPWDLPgKsLLPGNDMEWYFFSPRDRKYPNGSRTNRATKSGYW 91 
                               79****************************.99***************6434555788*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               katgkd++v s + ++vg+kktLv+y+grap+g++t+Wvmheyrl
  Tp57577_TGAC_v2_mRNA5483  92 KATGKDRKVNS-QARAVGMKKTLVYYRGRAPHGSRTNWVMHEYRL 135
                               ***********.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.45E-653158IPR003441NAC domain
PROSITE profilePS5100561.3498158IPR003441NAC domain
PfamPF023653.4E-309135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MQMAPVSLPP GFRFHPTDEE LVAYYLNKKI NGHKIDLEII AEVDLYKCEP WDLPGKSLLP  60
GNDMEWYFFS PRDRKYPNGS RTNRATKSGY WKATGKDRKV NSQARAVGMK KTLVYYRGRA  120
PHGSRTNWVM HEYRLDEREC ETTPSLQDAY ALCRVIKKNT VIVPKVGGQY SNLTSHAKQI  180
TSNQSPSVEV YSEGRGESSN YLMQMNACSP HNMGGSETSL NINGGISDHG DWSQFSYDQG  240
LPTSFNNYGT ITYPPSKMDI ALECARMQHR LPPLEVEDFP QGSKTKKDIL EEILSLNHAS  300
QELMNHSSYS QAFGDNENYA PYEDDFNFMV GTNYNHINDM SSMRYVDKSW EDLSTGSIEI  360
GGLEDQELKS RRMEENLRWI GMPREDLEKM EQKIVPIEDI SCFQTLREQN GMQEYEQNNG  420
NYLEQNDTYV NEFSLGFIND GDPNEIFIED GNMDGYSNSP SFEVIEEIKV SHGRMLVSTQ  480
QVAMTLFHQV VPSQTLQVQL NPMMTNKNNS IENVEEVMMI MENQGSFFRK FKEIASLVVF  540
VFSLLLMHCV YLEEEVEICK TNPNNVKEKK MRESYERIKW NESKEVWFVG FKSEEKGLSV  600
VLKKIGIFLT ISLAICTLWA SHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-58316012167NO APICAL MERISTEM PROTEIN
1ut4_B8e-58316012167NO APICAL MERISTEM PROTEIN
1ut7_A8e-58316012167NO APICAL MERISTEM PROTEIN
1ut7_B8e-58316012167NO APICAL MERISTEM PROTEIN
3swm_A8e-58316015170NAC domain-containing protein 19
3swm_B8e-58316015170NAC domain-containing protein 19
3swm_C8e-58316015170NAC domain-containing protein 19
3swm_D8e-58316015170NAC domain-containing protein 19
3swp_A8e-58316015170NAC domain-containing protein 19
3swp_B8e-58316015170NAC domain-containing protein 19
3swp_C8e-58316015170NAC domain-containing protein 19
3swp_D8e-58316015170NAC domain-containing protein 19
4dul_A8e-58316012167NAC domain-containing protein 19
4dul_B8e-58316012167NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5483
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616168.10.0NAC domain-containing protein 86
TrEMBLG7KFT90.0G7KFT9_MEDTR; NAC transcription factor-like protein
STRINGAES991260.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-136NAC domain containing protein 28