PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA5142
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family B3
Protein Properties Length: 901aa    MW: 99912.7 Da    PI: 7.003
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA5142genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.45.5e-18321420198
                               EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 
                               f+k l+ sd+++ grlvlpk +ae++   ++++e+  l+++d +g++W +++++  +++s++yvl+ G     ++ +L++gD+v+
  Tp57577_TGAC_v2_mRNA5142 321 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVKGKEWMFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVT 404
                               89**************************555567778***************9989999999***9.****************** PP

                               EEE-SSSEE..EEEEE- CS
                        B3  82 Fkldgrsefelvvkvfr 98 
                               F++++  e++l +++++
  Tp57577_TGAC_v2_mRNA5142 405 FSRMD-PEGKLIMGFRK 420
                               **876.77777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-29313428IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.27E-18318420IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-21319420No hitNo description
PfamPF023621.6E-15321420IPR003340B3 DNA binding domain
PROSITE profilePS5086311.166321422IPR003340B3 DNA binding domain
SMARTSM010191.2E-19321421IPR003340B3 DNA binding domain
PROSITE profilePS5105013.298586636IPR011124Zinc finger, CW-type
PfamPF074969.5E-10591633IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:2000034Biological Processregulation of seed maturation
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MESRCCMNVL CGTSTSIRWR KGWLLRSGEF SDLCDKCGSA YDQSAFCDIF HAKDSGWREC  60
TSCGKRLHCG CVASKSQLEI LDTGGVSCIT CTSYSGLQPI AGNEKPNESE TAKVKHVSVQ  120
QYLSLANQLN ARGMQVGNYT ENDGLRCWLK PHNVNMDGPS TEIKPEVLPS VGEFGSTLVS  180
QFHRESNGSS RTAKGENYKA GDMQDIYESL TQTNLSMTLA APLVNSNPFH NVLVDEREQS  240
KMSAPLLLAS RSRHLLPKPP RPTLSPGLEA NAGMVSQVRI ARPPAEGRGR NQLLPRYWPR  300
ITDQELQQIS GDSNSTIVPL FEKMLSASDA GRIGRLVLPK ACAEAYFPPI SQPEGLPLRI  360
QDVKGKEWMF QFRFWPNNNS RMYVLEGVTP CIQSMQLQAG DTVTFSRMDP EGKLIMGFRK  420
ATNSASVQET FPSNKPNGSH SSETSYSGVY ENLPILSGYS GLLQSQKGCS ETHLNALSKK  480
WNSVGGDMDW HNVEMPESRK RDALSLPPVL VPEKKRTRNI GSKSKRLLID SQDALELKLT  540
WEEAQDLLRP PPEVKPSVVM IEDHLFEEYE EPPVFGKKSI FVVRSNGINE QWTQCDSCLK  600
WRKLPVDVLI PPKWTCMENF WDQSRCSCAA PNELNPRELD NLLRMNKEFK KQRLAAASQR  660
PALERESPGL DALANAAVLG DDASESGTTP VMTTTKHPRH RPGCSCIVCI QPPSGKGKHK  720
PTCTCNVCMT VKRRFKTLMM RKKKRQSERE AEIAQKNQLS YRTKDESEVD STSRHLTPVN  780
GSENGARVPN ELDSRSQDQV AEAATGQLDL NCQPDRDDVQ SGPNTLSMMT LLEEANLPLE  840
TYLKQNGLSS LISEQQTNSA SNVQAQTTNE SEGRQNEDCN TASVVHEQEG SPEENSNSVS  900
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-692994282131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1731742KRRFKTLMMRKK
2731744KRRFKTLMMRKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA5142
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1475370.0AC147537.39 Medicago truncatula clone mth2-133k2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003605289.10.0B3 domain-containing transcription repressor VAL2 isoform X2
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A2K3NLM20.0A0A2K3NLM2_TRIPR; B3 domain-containing protein
STRINGAES874860.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110183239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]