PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4278
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 518aa    MW: 58928.5 Da    PI: 5.2362
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4278genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.2e-163481148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT++Ed +l+++v+++  g+W+++ +  g+ R++k+c++rw ++l
  Tp57577_TGAC_v2_mRNA4278 34 KGPWTPQEDMILIEYVNKHCEGNWNSVQKNSGLLRCGKSCRLRWANHL 81
                              79******************************99**********9986 PP
2Myb_DNA-binding21.55.6e-0787115130
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIart 30 
                               +g+++++E++++++++++lG++ W++ a+ 
  Tp57577_TGAC_v2_mRNA4278  87 KGSFSEDEEKIIIELHAKLGNK-WARMAAQ 115
                               799*******************.**99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.8022985IPR017930Myb domain
SMARTSM007174.7E-133383IPR001005SANT/Myb domain
PfamPF002492.6E-143481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-223588IPR009057Homeodomain-like
SuperFamilySSF466892.57E-2335111IPR009057Homeodomain-like
CDDcd001671.26E-93681No hitNo description
PROSITE profilePS500908.5682172IPR017877Myb-like domain
SMARTSM007173.2E-686174IPR001005SANT/Myb domain
PfamPF002493.2E-687116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-1989114IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-19155175IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MARIIISNNN TNNNVEVDIE SSKDDVDAKT GMKKGPWTPQ EDMILIEYVN KHCEGNWNSV  60
QKNSGLLRCG KSCRLRWANH LRPNLKKGSF SEDEEKIIIE LHAKLGNKWA RMAAQVLYFT  120
INYIXXXXXX XXXXXXXXXF LHNFFFIIFF LHKISLPGRT DNEIKNFWNT RMKRRQRAGL  180
PLYPPEVQAE AIAYNNHLMK EYHHTIDEPL SSSSPSFSLL LSSCYPKNID NDQNNHDYNP  240
MQNNSDSSNH YTNPSPQFNF SNDHENLEIN ETHALPNSPS LSPYPSSSSN LINHSFGNPN  300
DSHEYQYSEN LSYDQHGFNA RSLCDSETPV SSYASGVDGL MGNSNMVNDC YEDHAPLSPK  360
GNNSGLLDDL VMEGRNISCN DKARSEDSTF RGNESYKRKR MEGEEYNEER DIIPLMKKRI  420
VDETQKKDFS SSQLPTGKKP IEEDPLAGMN SVYDDDLDCL LNNFPSEIPM PEWYCRGKSQ  480
SLGLETQTDH ASSSSVPNNQ EFAWTLGSTW SNMPGIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-22341757107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4278
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1574881e-128AC157488.1 Medicago truncatula chromosome 2 clone mte1-33n12, complete sequence.
GenBankAC1652751e-128AC165275.5 Medicago truncatula chromosome 2 BAC clone mte1-36o22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596969.10.0transcription factor MYB101
TrEMBLA0A2K3KZF10.0A0A2K3KZF1_TRIPR; Transcription factor
STRINGAES672200.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.17e-64myb domain protein 101