PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40511
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB
Protein Properties Length: 479aa    MW: 54781 Da    PI: 6.51
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40511genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26e-16164209147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                rg W + Ed +l+++v+++G+ +W++Ia+ +  gR++k+c++rw++ 
  Tp57577_TGAC_v2_mRNA40511 164 RGHWRPAEDSKLKELVALYGPQNWNLIAENLE-GRSGKSCRLRWFNQ 209
                                899*****************************.***********996 PP
2Myb_DNA-binding53.17.5e-17216259146
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                r ++ +eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Tp57577_TGAC_v2_mRNA40511 216 RRAFNEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 259
                                66899*****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.869159210IPR017930Myb domain
SMARTSM007173.3E-14163212IPR001005SANT/Myb domain
SuperFamilySSF466891.98E-27163257IPR009057Homeodomain-like
PfamPF002491.4E-15164209IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-25165217IPR009057Homeodomain-like
CDDcd001677.46E-13167208No hitNo description
PROSITE profilePS5129426.289211265IPR017930Myb domain
SMARTSM007175.9E-14215263IPR001005SANT/Myb domain
PfamPF002491.9E-13216258IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-20218264IPR009057Homeodomain-like
CDDcd001675.79E-11218258No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
LSHSHTCESR SKRISLYHKE VKNYLVKSNE FLNMNISSQE NQNNNSFIYP FSSSHSSSMQ  60
MVYSDLGSLS LTSTSNYGGV VSSSSSRWSN SFPFMRESFV SKGFEEEEKM DDDDIMEGKG  120
SYCSEDGENS EKTNHDIINF TDELENPNGS GKEEDNGQSS KCARGHWRPA EDSKLKELVA  180
LYGPQNWNLI AENLEGRSGK SCRLRWFNQL DPRINRRAFN EEEEERLMQA HRIYGNKWAM  240
IARLFPGRTD NAVKNHWHVI MARKYREQSN AYRRRRLSQN VYRRMDQNPS FICKDTNTTT  300
METESSTPYF LNGAPLGNSM SIFPYATSFQ HGVHGGGVDY GLNVLPHMSG EREAMKGPLH  360
VGLYAQQAPF DFFSEGGRNN GMVMKESFNH NNYWDGTNDE YQQHQQLSSF YHHYPQQQYL  420
MSMQQQNNHN FYNFSNSSAS STHHHHNGEN SEKVVIGDTP DAVQTPPQFF DFLGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-321642647107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271276YRRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40511
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0258400.0CT025840.2 Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003613837.10.0transcription factor MYB105
TrEMBLG7KGM90.0G7KGM9_MEDTR; Myb transcription factor
STRINGAES967950.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-70myb domain protein 105