PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA40490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C2H2 | ||||||||
Protein Properties | Length: 369aa MW: 42378.5 Da PI: 4.5208 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C +sF++ L H+r+H Tp57577_TGAC_v2_mRNA40490 4 YKCKLCYRSFNNGRALGGHMRSH 26 9*********************9 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00013 | 248 | 270 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k+F++ L H +H Tp57577_TGAC_v2_mRNA40490 248 YKCETCNKVFKSYQALGGHRASH 270 9************9999998887 PP | |||||||
3 | zf-C2H2 | 11.7 | 0.00083 | 294 | 316 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C ++F++ L H rtH Tp57577_TGAC_v2_mRNA40490 294 HECPVCFRVFNSGQALGGHKRTH 316 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.95E-5 | 3 | 28 | No hit | No description |
Pfam | PF13912 | 2.9E-8 | 4 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.367 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.023 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.47E-8 | 247 | 316 | No hit | No description |
Pfam | PF13912 | 6.3E-12 | 247 | 272 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.367 | 248 | 275 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.01 | 248 | 270 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 250 | 270 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.286 | 294 | 316 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.5E-11 | 294 | 316 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.15 | 294 | 316 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 296 | 316 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MDKYKCKLCY RSFNNGRALG GHMRSHMMNL LVTKPEEDSS RMIQLSFEAE SAPSSSSSED 60 DDDDEKGLSY GLRENPKRSI RLVDQDFSFP QVDTSSVIVQ DIESETESSK NNPTRRRSKR 120 VWKIREFDQK YYGESAMKKV RFFNKTISSV VDHEPVSSVS DTTTEEDVAF CLMQLSRDNW 180 NRQSEQYEEP EEDDEEEIEY DEDEDEEAEE EEEEEEEEEI ERSLEDSDES QELIKVSKNN 240 NKVRKGRYKC ETCNKVFKSY QALGGHRASH KKIKLNITVE ESQPEYEVVE KKIHECPVCF 300 RVFNSGQALG GHKRTHVIHG STTTVPIFSS KKVAKSVIDL NLPAPIDDDE VSQIENSAVS 360 DAEFVKTR* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA40490 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013442483.1 | 0.0 | zinc finger protein ZAT9 isoform X2 | ||||
TrEMBL | A0A072THU2 | 0.0 | A0A072THU2_MEDTR; C2H2-type zinc finger protein, putative | ||||
STRING | XP_004494014.1 | 1e-172 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 5e-67 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA40490 |