PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA40383
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 301aa    MW: 33306.6 Da    PI: 6.8468
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA40383genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.8e-18111161256
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                 y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Tp57577_TGAC_v2_mRNA40383 111 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 161
                                69****998.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.209111168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-31111169IPR001471AP2/ERF domain
PfamPF008476.6E-13111161IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-21111169IPR016177DNA-binding domain
SMARTSM003808.0E-37111174IPR001471AP2/ERF domain
PRINTSPR003673.5E-10112123IPR001471AP2/ERF domain
CDDcd000181.05E-32112170No hitNo description
PRINTSPR003673.5E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MGNKRIIKNK HTSLFLCTFH THSFLSIYTS KSNISTPLSL EEKIHINMEN DASENIFSTS  60
SSSSTSSTPT SPTSSISNSC TNQNQDTKNS PQNETKCKKR ERSEKDTKHP TYRGVRMRAW  120
GKWVSEIREP RKKSRIWLGT YPTAEMAARA HDVAALAIKG HSAYLNFPNL AQNLPRPSTT  180
SPKDIQIAAA KAASTVFVEV KDCCQGENDQ HVQNHEDQGS FSSVSSIDNV QESNSSSPNS  240
TTTSTTTATN DDIDDTLFDL PDLFLDGKNG LLSFSSSWHL CSVDSGLRLE EQFSSSWEYY  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-171071691073Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA40383
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445911e-123AC144591.11 Medicago truncatula clone mth2-5f17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003622605.11e-104ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ73e-63ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2K3NJH10.0A0A2K3NJH1_TRIPR; Ethylene-responsive transcription factor erf034-like protein
STRINGAES788231e-103(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]