PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4029
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 263aa    MW: 29758.6 Da    PI: 6.3679
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4029genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC173.81.8e-54801841102
                     NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 
                               ql++fw++q   ie++ dfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+d+aaa
  Tp57577_TGAC_v2_mRNA4029  80 QLQMFWANQmqeIEQTFDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDVAAA 164
                               89******9878899********************************************************************** PP

                     NF-YC  83 vtrtdifdflvdivprdelk 102
                               ++r d+fdflvdi+prdelk
  Tp57577_TGAC_v2_mRNA4029 165 IARNDVFDFLVDIIPRDELK 184
                               *****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.84E-3358174IPR009072Histone-fold
Gene3DG3DSA:1.10.20.103.7E-3794165IPR009072Histone-fold
PfamPF008086.1E-21102165IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDNSEQNQQQ QHVMGVAPND SQMTYSSHYQ TVPMMASGTP AGAIPTATHP PATFSNSAHQ  60
FAYQQAQHFH HQQQNQQQQQ LQMFWANQMQ EIEQTFDFKN HTLPLARIKK IMKADEDVRM  120
ISAEAPVVFA KACEMFILEL TLRSWIHTEE NKRRTLQKND VAAAIARNDV FDFLVDIIPR  180
DELKEEGLGI AKGTIPIIGA PADMPYYYVP PQHHLGPTGM IMGNPVDQAA LYYNQQPRPP  240
MAFMPWPNAH PQKQQPPQQT DS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-5587180295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1152158RRTLQKN
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA4029
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9182960.0JQ918296.1 Medicago truncatula nuclear transcription factor Y subunit C4 (NF-YC4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027340920.11e-136nuclear transcription factor Y subunit C-2 isoform X1
RefseqXP_027340921.11e-136nuclear transcription factor Y subunit C-2 isoform X1
RefseqXP_027340922.11e-136nuclear transcription factor Y subunit C-2 isoform X1
RefseqXP_027340923.11e-136nuclear transcription factor Y subunit C-2 isoform X1
RefseqXP_027340924.11e-136nuclear transcription factor Y subunit C-2 isoform X1
TrEMBLA0A2K3NKH60.0A0A2K3NKH6_TRIPR; Nuclear transcription factor Y subunit C-9-like protein
STRINGGLYMA15G41486.11e-132(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123722836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-72nuclear factor Y, subunit C2