PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA40216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 250aa MW: 28271 Da PI: 7.9116 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.2 | 1.5e-27 | 95 | 152 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqK+ k++ pr+Y+rC++a +C +kkkv+++ +d ++++ tY geHnh Tp57577_TGAC_v2_mRNA40216 95 KDGYQWRKYGQKVTKDNASPRAYFRCSMApSCLAKKKVQKCIHDRSIIVATYDGEHNH 152 8***************************99**************************** PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.9E-27 | 89 | 155 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.788 | 89 | 155 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-24 | 91 | 155 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.2E-30 | 94 | 154 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-22 | 95 | 152 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 250 aa Download sequence Send to blast |
MDEKVETLQL ELQQVREENN TLRFMLEVMS IKCTKLESQL QEIKKEEHKG TSSNQIGLIP 60 NIDSNKRARL EFPTAKKPLE VFVRTNPNDD NLTIKDGYQW RKYGQKVTKD NASPRAYFRC 120 SMAPSCLAKK KVQKCIHDRS IIVATYDGEH NHGVPHQSFK PSSSTLNFSS ISNNKLPPTL 180 NDKETINTGI CEDVMQQFGY GKHIKIEEYA SSLIKDSDFT AALAEAVVQN ITGQHKRQGL 240 NLDLNLSEE* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-17 | 94 | 155 | 14 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA40216 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC128660 | 2e-99 | AC128660.31 Medicago truncatula clone mth2-14p23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003588831.1 | 1e-148 | probable WRKY transcription factor 40 | ||||
TrEMBL | G7I7N0 | 1e-147 | G7I7N0_MEDTR; Putative transcription factor WRKY family | ||||
STRING | AES59082 | 1e-147 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7398 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G25000.1 | 2e-40 | WRKY DNA-binding protein 60 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA40216 |