PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA39745
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 686aa    MW: 75834.6 Da    PI: 7.0856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA39745genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07261281526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                +C+ f++ G C+ Gd+C +aHg
  Tp57577_TGAC_v2_mRNA39745 261 PCPEFRK-GSCQKGDSCEYAHG 281
                                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484033.38E-1223140IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-1227139IPR020683Ankyrin repeat-containing domain
CDDcd002043.63E-971138No hitNo description
PROSITE profilePS5029712.6272142IPR020683Ankyrin repeat-containing domain
SMARTSM002480.4472102IPR002110Ankyrin repeat
PfamPF136371.9E-674131No hitNo description
PROSITE profilePS500889.938107142IPR002110Ankyrin repeat
SMARTSM002488.5E-4107139IPR002110Ankyrin repeat
SMARTSM003564.0E-5256282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.544256283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4261283IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-5261281IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4288320IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.132291315IPR000571Zinc finger, CCCH-type
SMARTSM0035620291314IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MCSGSKSKLS SSDYNMEDKL QKGIHNSSIL LELSASDDFD AFKREVDEKG LDVNEEGFWY  60
GRRIGSKKME SEKRTPLTIA SLFGSTKVLK YIVLTGKVDV NRVCGSDMVT ALHCAVAGGS  120
EFSLEVVKLL LDAGADVDCL XXXXXXXXXX XXXXXTSSKS RRKVLEMFLR GEVSAELVQG  180
EMDASFSLKK DGGDKKEYPI DISLPDINNG VYGSDDFRMY SFKVKPCSRA YSHDWTECPF  240
VHPGENARRR DPKKYPYSCV PCPEFRKGSC QKGDSCEYAH GVFESWLHPA QYRTRLCKDE  300
TGCNRKVCFF AHKPEELRPV YASTGSAMPS PKSYSANAID MTSMSPLSLS SSSLPMSTVS  360
TPPMSPLAGS SSPKSGNLWQ NKINLTPPSL QLQGSRLKSA LSARDMDLEM ELLGLDSPRR  420
QQQQLQQQQL IEEIARISSP SFRNNEFNRI ADLNPTNLDD LLASADPNLL SQLHGLSMQP  480
STPTQQMQSP SAMQMRQNMN MNMSQNMNMN HLRASYPSNN MPSSPVRKPS AYGFDSSAAV  540
AAAVMNSRSS AFAKQRSQSF IDRGAANHHL GLSSPSNTSS RMSSGLSDWG SPTGKLDWGV  600
NGDDLNKLRK SASFGFRNNA AAPTPSQHAE PDVSWVNSLV KDVPSENSDI YGGENMRQLQ  660
QYDLSREMLP PWVEQMYIEQ EQMVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA39745
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9141300.0CU914130.1 Medicago truncatula chromosome 5 clone mth4-73m1, COMPLETE SEQUENCE.
GenBankCU9141310.0CU914131.2 Medicago truncatula chromosome 5 clone mth4-85a6, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003616654.20.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2K3P5P70.0A0A2K3P5P7_TRIPR; Zinc finger CCCH domain-containing protein 29-like
STRINGAES996120.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-175C3H family protein