PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38592
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C3H
Protein Properties Length: 495aa    MW: 56094.1 Da    PI: 8.1815
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38592genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07139161326
                                S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                t++Cr+fa  G C++G+ C+F H 
  Tp57577_TGAC_v2_mRNA38592 139 TKPCRDFAV-GNCRRGSHCHFLHH 161
                                89*******.*************6 PP
2zf-CCCH17.47.7e-06199219425
                                ---SGGGGTS--TTTTT-SS-S CS
                    zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                                e C +f + G C+ G++C+F H
  Tp57577_TGAC_v2_mRNA38592 199 EACINFEK-GRCRTGESCRFVH 219
                                78******.************* PP
3zf-CCCH21.63.8e-07264284526
                                --SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                +C++fa  G C yG  C+F+H+
  Tp57577_TGAC_v2_mRNA38592 264 PCKYFAL-GNCLYGKDCRFSHD 284
                                7**9999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.159136163IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-5136162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-6139162IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-5139161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.615195223IPR000571Zinc finger, CCCH-type
SMARTSM003560.034196221IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4199220IPR000571Zinc finger, CCCH-type
PfamPF146080.18201219No hitNo description
SuperFamilySSF902294.97E-6260284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887260286IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-5260285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4264286IPR000571Zinc finger, CCCH-type
PfamPF146080.0016264283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MSGSGRKLSS NWDSRDEPEF ASESVTNSNS SRFLERNDML NSRMGFSRME PFSGGRGSNK  60
DDVGSEDYKV LDATNAQDTD GSYNMKTSPG FEEWKIRKHS QYSKNDYGRR SRSQSRSPSR  120
GFRYSDVDDR NRIRAGRSTK PCRDFAVGNC RRGSHCHFLH HDNQSCEDSR ESRHRQDGPR  180
YSNPRESGDY SIADRRSNEA CINFEKGRCR TGESCRFVHH GKSNGFDKVS TYESSREREV  240
DRRHMDSSFK QEGQHYPNHK SNIPCKYFAL GNCLYGKDCR FSHDRHSFTS PRLRDDRSRS  300
NQGEDQVLDR QKMSDSVTPN ERPRDDRWVS DGSMAGVDKV WDGPKQNDLV AVSDTAKLVE  360
DKKIISAPEP GLMTWPMNDG LDYSLNQNRV HNESPFSIVS IDKKEANCRT EENAVDNILL  420
SQSLGGAGGI WPGDEKMSPD WNYGSRSSSH IKDEDGHNKH QVAPGQGLNQ NAQNITASHV  480
RIHFCNGKNG RSMI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38592
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630250.10.0zinc finger CCCH domain-containing protein 38 isoform X2
RefseqXP_024628572.10.0zinc finger CCCH domain-containing protein 38 isoform X2
TrEMBLA0A2K3PBZ80.0A0A2K3PBZ8_TRIPR; Zinc finger CCCH domain-containing protein 38-like
STRINGAET047260.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40993252