PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA38416
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HD-ZIP
Protein Properties Length: 840aa    MW: 92233.5 Da    PI: 6.5764
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA38416genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-181775357
                               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Tp57577_TGAC_v2_mRNA38416 17 KYVRYTPEQVEALERLYHDCPKPSSVRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 75
                               5679*****************************************************97 PP
2START175.53.2e-551623702205
                                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEE CS
                      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevi 85 
                                +aee+++e+++ka+ ++  Wv+++ +++g+e++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+
  Tp57577_TGAC_v2_mRNA38416 162 IAEETLAEFLSKATGTAVEWVQMPGMKPGPESIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWYRDCRAVDILNVL 244
                                7899******************************************************.8888888888*************** PP

                                CTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEE CS
                      START  86 ssg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghsk 163
                                 ++  g+++l +++l+a+++l+p Rd + +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s 
  Tp57577_TGAC_v2_mRNA38416 245 PTAngGTIELLYMQLYAPTTLAPaRDLWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSI 328
                                *9999*************************************************9988899*********************** PP

                                EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                      START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqce 205
                                +++v+h+dl+ ++++++lr+l++s+++ ++kt++ +l+++++
  Tp57577_TGAC_v2_mRNA38416 329 IHIVDHMDLEPWSVPEVLRPLYESSTMLAQKTTMVALRHLRQ 370
                                **********************************99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1921276IPR001356Homeobox domain
SMARTSM003891.5E-151480IPR001356Homeobox domain
CDDcd000866.30E-161777No hitNo description
SuperFamilySSF466897.27E-171780IPR009057Homeodomain-like
PfamPF000464.0E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.7E-181975IPR009057Homeodomain-like
CDDcd146861.15E-669108No hitNo description
PROSITE profilePS5084824.505152353IPR002913START domain
CDDcd088754.55E-78156371No hitNo description
Gene3DG3DSA:3.30.530.202.5E-22161367IPR023393START-like domain
SMARTSM002342.3E-41161371IPR002913START domain
SuperFamilySSF559616.18E-37161370No hitNo description
PfamPF018521.3E-52162370IPR002913START domain
PfamPF086704.1E-50696838IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MSCKDGKGGN GGIDNGKYVR YTPEQVEALE RLYHDCPKPS SVRRQQLIRE CPILSHIEPK  60
QIKVWFQNRR CREKQRKEAS RLQAVNRKLT AMNKLLMEEN DRLQKQVSHL VYENGYFRQH  120
TTQNTNLATK DTSCDSAVTS GQRSLTAQHP PRDASPAGLL SIAEETLAEF LSKATGTAVE  180
WVQMPGMKPG PESIGIVAIS HGCPGVAARA CGLVGLEPTR VAEILKDRPS WYRDCRAVDI  240
LNVLPTANGG TIELLYMQLY APTTLAPARD LWLLRYTSVL EDGSLVICER SLKNTQNGPS  300
MPPVQHFVRA EMLPSGYLIR PCEGGGSIIH IVDHMDLEPW SVPEVLRPLY ESSTMLAQKT  360
TMVALRHLRQ ISHEVSQSNV TGWGRRPAAL RALGQRLSRG FNEALNGFSD EGWSMIGNDG  420
VDDVTILVNS SPDKLMGLNL SFANGFPSVS NAVLCAKASM LLQNVPPAIL LRFLREHRSE  480
WADNNMDAYS AAAIKVGPCS FAGSRVGNYG GQVILPLAHT IEHEEFLEVI KLEGIAHSPE  540
DTIMPREVFL LQLCSGMDEN AVGTCAELIF APIDASFADD APLLPSGFRI IPLDSGKEVV  600
NPNRTLDLAS ALDIGPAGNK SSNDSSGNSG CMRSVMTIAF EFAFESHMQD HVASMARQYV  660
RSIISSVQRV ALALSPSNLS SQAGLRTPLG TPEAQTLARW ICNSYRCFLG AELLKSNNEG  720
NESLLKSLWH HSDAILCCTL KAMPVFTFAN QAGLDMLETT LVALQDIALE KIFDDHGRKI  780
LCSEFPHIIQ QGFACLQGGL CLSSMGRPIS YERVVAWKVL NEEENGHCIS FMFVNWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA38416
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486776.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1S2XDZ70.0A0A1S2XDZ7_CICAR; homeobox-leucine zipper protein ATHB-15
STRINGXP_004486776.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]