PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA3803
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family C2H2
Protein Properties Length: 273aa    MW: 30352.6 Da    PI: 7.6203
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA3803genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.4e-05207229223
                               EETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                               kCp C+  Fs+  +L+ H ++ H
  Tp57577_TGAC_v2_mRNA3803 207 KCPLCDAKFSSATSLVDHAKKvH 229
                               7*******************989 PP
2zf-C2H212.30.00051247268323
                               ETTTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   3 CpdCgksFsrksnLkrHirt.H 23 
                               Cp+C+k F ++ +L+ H  + H
  Tp57577_TGAC_v2_mRNA3803 247 CPKCSKGFLDPVSLVEHVERdH 268
                               *****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183107.59E-13652No hitNo description
Gene3DG3DSA:4.10.1110.102.6E-101153IPR000058Zinc finger, AN1-type
SMARTSM001546.6E-41352IPR000058Zinc finger, AN1-type
PfamPF014283.8E-131351IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.245206234IPR007087Zinc finger, C2H2
SMARTSM003550.015206229IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280208229IPR007087Zinc finger, C2H2
PROSITE profilePS501579.224245272IPR007087Zinc finger, C2H2
SMARTSM003552.2245268IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280247268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVSDCRQ IDFLPFTCDR CNQVYCLEHR SYIKHHCTKP NKNDVTVVIC  60
PLCAKGVRLI PDQDPNIVWD IHVNTDCDPS NYEKVTKKXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXSQDVEKPW YSQTQSSVEI VSSKEESKPN LNSTTTSSKW SSSFLDLASK  180
LSGEINQAWR GIGQSSGSGN ANNQMEKCPL CDAKFSSATS LVDHAKKVHQ RNGSKQYGVK  240
NVSISACPKC SKGFLDPVSL VEHVERDHGG SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA3803
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025604410.11e-106zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A445CLL71e-105A0A445CLL7_ARAHY; Uncharacterized protein
STRINGGLYMA03G29400.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-55C2H2 family protein