PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37663

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 63aa MW: 6855.02 Da PI: 8.789

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37663	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	44.3	5.2e-14	4	61	1	53
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee 53 +C++C+ lr++C++dC++ p++ p++q +++ +++k++G++ +l+ll+++ +++ Tp57577_TGAC_v2_mRNA37663 4 SCNGCRALRKGCSEDCIIKPCLewigsPEAQGHATLFLAKFYGRTGLLNLLANATNQK 61 6***************************************************998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	10.892	3	63	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.5E-11	4	61	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MKLSCNGCRA LRKGCSEDCI IKPCLEWIGS PEAQGHATLF LAKFYGRTGL LNLLANATNQ 60 KAQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37663

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013470179.1	8e-34	LOB domain-containing protein 42
Swissprot	Q9M886	4e-26	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2K3KZU4	1e-37	A0A2K3KZU4_TRIPR; LOB domain protein
STRING	AES84556	3e-33	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF20233	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	3e-25	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37663