PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA37157

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NAC

Protein Properties

Length: 330aa MW: 37488.2 Da PI: 6.852

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA37157	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.9	1.4e-51	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lppGfrF Ptdeel+v+yL++kv+g++++l +i+e+d+yk++Pw Lp k++ +ekewyfFs+rd+ky++g+r+nr++ sgyWk Tp57577_TGAC_v2_mRNA37157 14 LPPGFRFFPTDEELLVQYLCRKVAGHHFSL-PIIAEIDLYKFDPWVLPGKANFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWK 96 79************************99.88***********99999*************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Tp57577_TGAC_v2_mRNA37157 97 ATGTDKIITT-EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139 **9999.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-64	10	165	IPR003441	NAC domain
PROSITE profile	PS51005	60.125	14	164	IPR003441	NAC domain
Pfam	PF02365	8.6E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MGIPEKDPLS QLSLPPGFRF FPTDEELLVQ YLCRKVAGHH FSLPIIAEID LYKFDPWVLP 60 GKANFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120 IGKAPKGTKT NWIMHEYRLL DASRKHNLGS SKLDDWVLCR IYKKNSSLQK EVRTFSSKEC 180 SNGSSPSSSS HAEDMLDTFL EINDQSFELP RVTSLQMQHQ EEKFGFQNMG ARIFPDWVSP 240 PDLESIPEFD SESQTQGMLN YSCNDFCVPS VTPFGHMDLS STSKNPTDEE VQSGMRTHRV 300 NEISSLYQHN PNGFLWNLGD PFQFGYSGH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-105	1	170	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-105	1	170	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-105	1	170	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-105	1	170	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-105	1	170	7	174	NAC domain-containing protein 19
3swm_B	1e-105	1	170	7	174	NAC domain-containing protein 19
3swm_C	1e-105	1	170	7	174	NAC domain-containing protein 19
3swm_D	1e-105	1	170	7	174	NAC domain-containing protein 19
3swp_A	1e-105	1	170	7	174	NAC domain-containing protein 19
3swp_B	1e-105	1	170	7	174	NAC domain-containing protein 19
3swp_C	1e-105	1	170	7	174	NAC domain-containing protein 19
3swp_D	1e-105	1	170	7	174	NAC domain-containing protein 19
4dul_A	1e-105	1	170	4	171	NAC domain-containing protein 19
4dul_B	1e-105	1	170	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA37157

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013445409.1	0.0	NAC domain-containing protein 72
Swissprot	A0A3Q7HH64	1e-121	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A2K3MZH6	0.0	A0A2K3MZH6_TRIPR; NAC domain-containing protein
STRING	XP_004514350.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4429	33	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-115	NAC family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA37157

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]