PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA36809 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 364aa MW: 42641.8 Da PI: 8.6404 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.4 | 7.8e-21 | 34 | 121 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +f+++Y+ ++GF+vr+++ + ++g i ++++vCskeg r+++k++ + ++++r +trtgC k+ +k k +k++++++ Tp57577_TGAC_v2_mRNA36809 34 EFWKDYGGKIGFNVRRQYFNPD-KHGMILSARYVCSKEGVRKPDKRD-RLTSNRRFQTRTGCPVKMGIKYLKdIAKYKIHDFFD 115 69***************98887.7777******************99.9999*****************99989********** PP FAR1 84 eHnHel 89 +HnHel Tp57577_TGAC_v2_mRNA36809 116 KHNHEL 121 *****9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-15 | 34 | 121 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.2E-29 | 244 | 338 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 364 aa Download sequence Send to blast |
MDSVVPQETM SMDNELEWQP QLGKLFNTWE EAWEFWKDYG GKIGFNVRRQ YFNPDKHGMI 60 LSARYVCSKE GVRKPDKRDR LTSNRRFQTR TGCPVKMGIK YLKDIAKYKI HDFFDKHNHE 120 LHLPETTHML ASQRNLSKIQ AHEIDLADDA GIKQRALFEL MSRQVGGREN LGYTRVDQKN 180 YLRIKRLKNM AYGEVGSLLQ HFQQKCIENP SFYHGIQLDI DEQITNIFWA DARMIMDYEY 240 FGDVVTLDTT YSTNNAYRPL AIFAGFNHFR GVVIFGAALL YDETAESFEW LFREFLKAHK 300 SKKPQTVFTD QDHAMAKALR EVMPETYHGL CTWHLMQNVL KHLGHLMKNG SNLLRDIKFC 360 MFP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA36809 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024642355.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2K3PRH2 | 0.0 | A0A2K3PRH2_TRIPR; Protein FAR1-related sequence 5-like | ||||
STRING | XP_004305434.1 | 1e-151 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-67 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA36809 |