PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35801
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 455aa    MW: 50300.3 Da    PI: 7.7911
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35801genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.11.1e-09167209345
                                XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                                + k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Tp57577_TGAC_v2_mRNA35801 167 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 209
                                568899************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.7E-8159212No hitNo description
PfamPF077166.5E-7165211IPR004827Basic-leucine zipper domain
SMARTSM003381.4E-8165228IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415167211IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.88E-7169212No hitNo description
CDDcd147086.99E-22169221No hitNo description
PROSITE patternPS000360172187IPR004827Basic-leucine zipper domain
PfamPF141441.4E-30252326IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MGSRRRTAED TNKVVNGMPS YAPPLPPSNS MGMEGNIHPS RLSDFGAIEQ SLGFRIEDAM  60
NLSRNPVFNQ MKSNSQALGA DIQFGALNKA IANSDTNLSA AIGGSQTLQL QKESQPNLAS  120
TSGGHRENWG ESNMADGSAD TSTDDTEDKN QMPERGESSE RSKDKSDQKT LRRLAQNREA  180
ARKSRLRKKA YVQQLESSRL KLTQLEQELQ RARQQGIFIS STGEQTHSMS GNGAMAFDAE  240
YARWLEEHNR QTNELRAAIN SHAGDIELRT IVDNFMTQFE DIYRLKGVAA KADVFHILSG  300
MWKTPAERCF MWIGGFRSSE LLKLLVSHLE PLTEQQLMGI YNLQQSSQQA EDALSQGMDA  360
LQQSLSETLA NGSPNPSGAS GNVANYMGQM AMAMGKLGTL EGFLRQADNL RQQTLQQMLR  420
ILTTRQSARA LLAISDYFSR LRALSSLWLA RPRD*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35801
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1395140.0BT139514.1 Medicago truncatula clone JCVI-FLMt-18J5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003624993.10.0transcription factor TGA2.3 isoform X1
RefseqXP_024626252.10.0transcription factor TGA2.3 isoform X1
RefseqXP_024626253.10.0transcription factor TGA2.3 isoform X1
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A2K3P4Q10.0A0A2K3P4Q1_TRIPR; TGACG-sequence-specific DNA-binding protein TGA-2.1-like
STRINGAES812110.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14703494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.51e-145TGACG motif-binding factor 6