PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35734
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 186aa    MW: 21054 Da    PI: 5.0013
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35734genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.86.7e-142570348
                               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                                e + + q  fs+   g++ KA ELSvLC a+ a+ii s++++ly+
  Tp57577_TGAC_v2_mRNA35734 25 AEKSNKSQMMFSNCILGLFNKATELSVLCKAKTALIITSPNNELYT 70
                               5677788999***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.0E-61474IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.1381575IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-141785IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-61737IPR002100Transcription factor, MADS-box
PfamPF003198.6E-122670IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-63752IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-65273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAFDGNNNAT KLNTRKRKFG EIKKAEKSNK SQMMFSNCIL GLFNKATELS VLCKAKTALI  60
ITSPNNELYT CGFPNCDAII QQFLTGKNTI EDNEIKKQEE IVETLRLEYE VIGDKLKKLL  120
EEEKNWQAIN DEAEKSGSIS SCWWNDPIDD MDLQSLEEFK TSLEKLKLNL GSANDEKKLM  180
STLRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113118DKLKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35734
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027189143.13e-55agamous-like MADS-box protein AGL62
TrEMBLA0A2K3K6L41e-119A0A2K3K6L4_TRIPR; Agamous-like mads-box protein agl62-like
STRINGXP_004497957.14e-54(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-16AGAMOUS-like 62