PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA35239
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 389aa    MW: 44260.2 Da    PI: 7.5735
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA35239genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-1665110148
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                rg+++ +E++ +++++++lG++ W++Ia+ ++ +Rt++++k++w+++l
  Tp57577_TGAC_v2_mRNA35239  65 RGKFSLQEEQTIIQLHALLGNR-WSAIAAQLP-RRTDNEIKNYWNTHL 110
                                89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.314059IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.7E-114572IPR009057Homeodomain-like
SuperFamilySSF466891.67E-2045120IPR009057Homeodomain-like
PROSITE profilePS5129425.55760114IPR017930Myb domain
SMARTSM007178.3E-1664112IPR001005SANT/Myb domain
PfamPF002491.7E-1565110IPR001005SANT/Myb domain
CDDcd001676.54E-1167110No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2173111IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEAGVHYLPK LIHRQSNVFG LYIFYMINNI FLVNIFDILI EKGLQRCGKS CRLRWTNYLR  60
PDIKRGKFSL QEEQTIIQLH ALLGNRWSAI AAQLPRRTDN EIKNYWNTHL KKRLTRMGID  120
PTTHKPKTDH TSAGSSTCNQ YSKDSANLSH MAQWESARLE AEARLVRETN KLKVQKQLEF  180
ESSRPQARLF LNKITPLQQP SLPPCLDILK AWQSSWSKPT TTTTTKDETN NKVHSMYAMM  240
LSNDENLESP TSTLNFPGTT LLPLPLPLSL PVSVPMTNNI NVVAFNQNLL PLTDQSTNND  300
DEIWKQFNLT KQNTTETHDD HDNVNNNNML NFQQDDDIMA AVEAFRSCGG FDNNINTPPI  360
STNVLHENLD GSMMCNLSYC YVTLASSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-183911432108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA35239
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456756.10.0transcription factor MYB106
SwissprotQ9LE637e-70MY106_ARATH; Transcription factor MYB106
TrEMBLA0A2K3LLT90.0A0A2K3LLT9_TRIPR; MYB-related protein 306-like protein (Fragment)
STRINGXP_004517012.11e-163(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.12e-68myb domain protein 106