PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA34729
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NAC
Protein Properties Length: 343aa    MW: 39037.9 Da    PI: 7.4529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA34729genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1752.2e-54191581129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.............kvkaeekewyfFskrdkkyatg 71 
                                lp+GfrFhPtdeel+++yL +kv+++++++  +i+e+d++k+ePwdL               ++k +e+ewyfF+ rd+ky+tg
  Tp57577_TGAC_v2_mRNA34729  19 LPVGFRFHPTDEELINQYLVNKVNDDSFSA-IAIAEIDMNKCEPWDLAGelimlslflvfeeSAKIGETEWYFFCVRDRKYPTG 101
                                79*************************999.88**************8458999999998876667999*************** PP

                        NAM  72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                +r+nrat++gyWkatgkdke+++ +++l+g+kktLvfykgrap+gekt+Wvmheyrle
  Tp57577_TGAC_v2_mRNA34729 102 QRTNRATNAGYWKATGKDKEIIK-GNRLIGMKKTLVFYKGRAPRGEKTNWVMHEYRLE 158
                                **********************9.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-5816184IPR003441NAC domain
PROSITE profilePS5100554.90319184IPR003441NAC domain
PfamPF023657.0E-2920157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MRPYDNALKH KMDNEKFKLP VGFRFHPTDE ELINQYLVNK VNDDSFSAIA IAEIDMNKCE  60
PWDLAGELIM LSLFLVFEES AKIGETEWYF FCVRDRKYPT GQRTNRATNA GYWKATGKDK  120
EIIKGNRLIG MKKTLVFYKG RAPRGEKTNW VMHEYRLEGS NTVPTQNLSK QGTGEWVISR  180
VYVKGNCGKK MHGNSKKLGR FNSSSEGPSN ANESLLPQLM DSSFNNETKT TFGDFSHVLN  240
SFSVQNETMN IPSSAKQFGA EPAQNCFLSQ QESMLRMQME NENIGTSSKQ NVKQDFSLVR  300
DYFDGDISSV VYGNNMFQRL YGNQEFASTS TEPVVTDCLW NY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-481619014171NO APICAL MERISTEM PROTEIN
1ut4_B2e-481619014171NO APICAL MERISTEM PROTEIN
1ut7_A2e-481619014171NO APICAL MERISTEM PROTEIN
1ut7_B2e-481619014171NO APICAL MERISTEM PROTEIN
3swm_A2e-481619017174NAC domain-containing protein 19
3swm_B2e-481619017174NAC domain-containing protein 19
3swm_C2e-481619017174NAC domain-containing protein 19
3swm_D2e-481619017174NAC domain-containing protein 19
3swp_A2e-481619017174NAC domain-containing protein 19
3swp_B2e-481619017174NAC domain-containing protein 19
3swp_C2e-481619017174NAC domain-containing protein 19
3swp_D2e-481619017174NAC domain-containing protein 19
4dul_A2e-481619014171NAC domain-containing protein 19
4dul_B2e-481619014171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA34729
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1400337e-75AC140033.3 Medicago truncatula clone mth2-24f11, complete sequence.
GenBankAC1405447e-75AC140544.22 Medicago truncatula clone mth2-17g16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600845.21e-143NAC domain-containing protein 100
SwissprotQ9FLJ27e-85NC100_ARATH; NAC domain-containing protein 100
SwissprotQ9FLR36e-85NAC79_ARATH; NAC domain-containing protein 79
TrEMBLA0A2K3NMP00.0A0A2K3NMP0_TRIPR; NAC domain-containing protein
STRINGXP_004491830.11e-141(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.12e-87NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]