PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA33568
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRF
Protein Properties Length: 358aa    MW: 41221.9 Da    PI: 8.1457
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA33568genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.37.4e-2576120145
                        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  Tp57577_TGAC_v2_mRNA33568  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEQ 120
                                79****************************************997 PP
2QLQ54.43.9e-191045136
                        QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                               s+FT++Q+q+L++Q+l++Ky++ + P+Pp+L+  i+
  Tp57577_TGAC_v2_mRNA33568 10 SPFTPNQWQELEQQALVFKYMVTGTPIPPDLIYSIK 45
                               89*****************************98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.0E-111046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.1911146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.4E-141144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.26476120IPR014977WRC domain
PfamPF088793.3E-2177119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MLSASSRNRS PFTPNQWQEL EQQALVFKYM VTGTPIPPDL IYSIKRSLDT SISSRIFPHP  60
PIGWGCFEMG FGRKVDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RNRSRKPVEQ  120
QLVVSSTNTT SLTNTTSSSS SPYTNRNISL NNNNNSNLTS SFPFSTSMTC HDQSQQQQQP  180
FSQSYQNSSL NPYFYSQQSN SSKPLDHSDF QSQDATTHHL FLDSSSYSHD DKDYRRQVHG  240
IRDGVDERTF FPEATGSSRS YHQYGSYNEQ LQVNPFKSYS SSQQFQNIND NTRQQEQQQE  300
QHCFVLGTDF KSTRPTNKDK ESETTQKPLH HFFGEWTPKN TDSWLDLASN SRMPTDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA33568
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627270.20.0growth-regulating factor 5
TrEMBLA0A2K3PJM90.0A0A2K3PJM9_TRIPR; Growth-regulating factor 5-like protein
STRINGXP_004510465.11e-171(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.15e-64growth-regulating factor 5