PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA3257 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 71aa MW: 8272.7 Da PI: 9.646 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.8 | 2.1e-12 | 14 | 47 | 1 | 33 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.T CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.k 33 rg W++eEde+l+++++ +G g+W+++++ g k Tp57577_TGAC_v2_mRNA3257 14 RGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGtK 47 789*****************************32 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-15 | 6 | 43 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.854 | 9 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.28E-11 | 9 | 60 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-6 | 13 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-10 | 14 | 47 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.48E-7 | 17 | 47 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 71 aa Download sequence Send to blast |
MVHHSCCNKQ KVKRGLWSPE EDEKLIKYIT TYGHGCWSSV PKLAGTKKKL YTIYYFIKYI 60 VFKDVERVAD * |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that regulates lignified secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence (PubMed:12753590, PubMed:17147638, PubMed:17329564). May play a role in specifying early endothecial cell development by regulating a number of genes linked to secondary thickening such as NST1 and NST2. Acts upstream of the lignin biosynthesis pathway (PubMed:17329564). {ECO:0000269|PubMed:12753590, ECO:0000269|PubMed:17147638, ECO:0000269|PubMed:17329564}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA3257 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin. {ECO:0000269|PubMed:23410518}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP004521 | 3e-36 | AP004521.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT17K09, TM0049a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016171132.1 | 3e-27 | transcription factor MYB26-like isoform X1 | ||||
Swissprot | Q9SPG3 | 2e-25 | MYB26_ARATH; Transcription factor MYB26 | ||||
TrEMBL | A0A0S3SFU7 | 6e-26 | A0A0S3SFU7_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A1J6L3R8 | 1e-25 | A0A1J6L3R8_NICAT; Transcription factor myb26 | ||||
TrEMBL | A0A1S4AQP0 | 1e-25 | A0A1S4AQP0_TOBAC; transcription factor MYB26-like isoform X1 | ||||
TrEMBL | A0A1S4CIN3 | 1e-25 | A0A1S4CIN3_TOBAC; transcription factor MYB26-like isoform X2 | ||||
TrEMBL | A0A1S4CJG5 | 1e-25 | A0A1S4CJG5_TOBAC; transcription factor MYB26-like isoform X1 | ||||
TrEMBL | A0A1U7Y1Q8 | 1e-25 | A0A1U7Y1Q8_NICSY; myb-related protein 308 isoform X1 | ||||
STRING | XP_009795891.1 | 2e-26 | (Nicotiana sylvestris) | ||||
STRING | XP_009616294.1 | 2e-26 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17500 | 4 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13890.1 | 7e-28 | myb domain protein 26 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA3257 |
Publications ? help Back to Top | |||
---|---|---|---|
|