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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Tp57577_TGAC_v2_mRNA32500 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 83aa MW: 9608.26 Da PI: 10.8467 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 24.5 | 8.7e-08 | 16 | 75 | 1 | 53 |
FAR1 1 kfYneYAkevGFsvrkskskkskr.ngeitkrtfvCskegkreeekkk......tekerr 53
kf+ +Y ++G vrk++ +ksk+ g t+ +fvC keg r+++k + ++++rr
Tp57577_TGAC_v2_mRNA32500 16 KFWIDYWGRIGVGVRKQYIHKSKDgRGLATSCRFVCCKEGLRKSNKLNeilkqsSQDKRR 75
6999**************9999651577899**************999666543222222 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 4.3E-5 | 16 | 75 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 83 aa Download sequence Send to blast |
MPKKGMLFYN INGAWKFWID YWGRIGVGVR KQYIHKSKDG RGLATSCRFV CCKEGLRKSN 60 KLNEILKQSS QDKRREQIVK QG* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Tp57577_TGAC_v2_mRNA32500 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024632821.1 | 6e-20 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A2Z6MJF1 | 3e-30 | A0A2Z6MJF1_TRISU; Uncharacterized protein | ||||
| STRING | AES87711 | 4e-19 | (Medicago truncatula) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3045 | 14 | 49 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Tp57577_TGAC_v2_mRNA32500 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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