PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31715 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NF-YC | ||||||||
Protein Properties | Length: 169aa MW: 19547.5 Da PI: 5.7399 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 144.4 | 2.6e-45 | 45 | 146 | 2 | 100 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaa 82 l +fwe+q ie++ dfk + lPlari+ki+kade+v+mis+e+Pvl++kace+fi elt++sw eenkr+tl+ksdi++a Tp57577_TGAC_v2_mRNA31715 45 LDTFWENQnheIEETVDFKANCLPLARIRKIMKADEKVSMISSETPVLFAKACEMFITELTMQSWAILEENKRKTLQKSDISSA 128 789****99999************************************************************************ PP NF-YC 83 vtrtdifdflvdivprde 100 ++r d+fdflvdivpr++ Tp57577_TGAC_v2_mRNA31715 129 ISRNDMFDFLVDIVPREN 146 ***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.09E-28 | 8 | 138 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 3.0E-35 | 67 | 144 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-20 | 67 | 129 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MDQKKQENDI PTQTHNENQN KSNQIAQLSX XXXXXXXXXX LQRKLDTFWE NQNHEIEETV 60 DFKANCLPLA RIRKIMKADE KVSMISSETP VLFAKACEMF ITELTMQSWA ILEENKRKTL 120 QKSDISSAIS RNDMFDFLVD IVPRENTLEH NIFMNIPRRG SAPFANVP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 6e-42 | 51 | 144 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31715 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013462829.1 | 2e-55 | nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8L4B2 | 5e-48 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | A0A2K3JZA6 | 1e-87 | A0A2K3JZA6_TRIPR; Nuclear transcription factor Y subunit C-9-like protein (Fragment) | ||||
STRING | Aquca_017_00420.1 | 9e-50 | (Aquilegia coerulea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.4 | 2e-50 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31715 |