PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA31358 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Dof | ||||||||
Protein Properties | Length: 220aa MW: 24181.4 Da PI: 9.2966 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.3 | 6.7e-38 | 28 | 87 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s Tp57577_TGAC_v2_mRNA31358 28 KENLPCPRCDSTNTKFCYYNNYNYSQPRHFCKGCRRYWTQGGTLRDIPVGGGTRKNAKRS 87 6889****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 5.0E-29 | 24 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-32 | 29 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.984 | 31 | 85 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 33 | 69 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MPSSDSGESR RSTQPQNRPG PGAPGPEKEN LPCPRCDSTN TKFCYYNNYN YSQPRHFCKG 60 CRRYWTQGGT LRDIPVGGGT RKNAKRSRTQ HIAVTSSSSC SVVSSAPEHH HQYQSMTPIS 120 AXXXXXXXXX XXXXXXXXXX XXXXXXXQQQ HSRELWRIAC FRTGWGFPGM VDGSNIGGVP 180 VVSSNLWQLE GGEGGFVGGG DHYFSWPGLA ISTPVNGLK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA31358 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF767899 | 6e-56 | JF767899.1 Trifolium alexandrinum microsatellite TaSSR402 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518090.1 | 7e-73 | dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A2K3N400 | 5e-87 | A0A2K3N400_TRIPR; Dof zinc finger protein | ||||
STRING | GLYMA02G06970.2 | 3e-72 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2801 | 31 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 3e-41 | OBF binding protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA31358 |