PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA30860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | Dof | ||||||||
Protein Properties | Length: 355aa MW: 38861.1 Da PI: 8.5628 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.7 | 2.5e-38 | 43 | 101 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + a+kcprCds ntkfCyynnysl+qPr+fCk+CrryWt+GG+lrnvPvGgg+rk++k Tp57577_TGAC_v2_mRNA30860 43 KVAIKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGSLRNVPVGGGCRKKQKF 101 5679***************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-24 | 43 | 96 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.854 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.2E-32 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MMPPNNNTPQ DHDQNKNQQK QQEQVSSSET KKRPSSSTSD EQKVAIKCPR CDSPNTKFCY 60 YNNYSLTQPR HFCKTCRRYW TNGGSLRNVP VGGGCRKKQK FKHSSSQSIL SKYSSSPSLD 120 FHLGGLLPLP LPLPLPFSSK VHHHANHQPF LNNQFSSSFQ LDHSLSSNSL MGLNNLYPFS 180 SSNGNGIFNG ANGMNFMNVN SASAITTNST SLASSIESLS CMNQDLHLKL QQQRLATMFG 240 GGDDNKKDDI NGISSSNVLV SGQVSSIEKP QTILFQNLDI SKTNVPNGGD APMEWLFGNS 300 YSSFMMTPTI TTSSIGGVCI NGDHDHGNNN GWINNGVNAW SDVQQQQQPY TALP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA30860 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC174360 | 8e-75 | AC174360.8 Medicago truncatula chromosome 8 clone mth2-31a5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003628883.1 | 1e-108 | dof zinc finger protein DOF5.7 | ||||
TrEMBL | A0A2K3MYI3 | 1e-127 | A0A2K3MYI3_TRIPR; Dof zinc finger protein | ||||
STRING | AET03359 | 1e-107 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3854 | 34 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 4e-30 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA30860 |