PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA30827 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 125aa MW: 14937 Da PI: 10.7435 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.3 | 4.6e-10 | 26 | 69 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 WT +E+ +++++ +g+Wk I+++ ++t+ q+ s+ qky Tp57577_TGAC_v2_mRNA30827 26 WTDDEHIRFLEGLLHGYKGNWKVISQKYVVTKTPTQVASHAQKY 69 ***********987766678*********9*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.362 | 18 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-5 | 19 | 73 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.02E-13 | 21 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-4 | 22 | 72 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.9E-14 | 23 | 73 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-7 | 25 | 69 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MPPLNFQFTD QATHNNNAQM RKVVHWTDDE HIRFLEGLLH GYKGNWKVIS QKYVVTKTPT 60 QVASHAQKYF KRQKQRFDDK SKDIKRKPRT SIHDXXXXXX XXXXXXXXXX XXXXTLMRDY 120 QQRM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 87 | KRQKQRFDDKSKDIKRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA30827 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003600854.2 | 4e-28 | transcription factor SRM1 | ||||
TrEMBL | G7JAP1 | 9e-27 | G7JAP1_MEDTR; MYB-like DNA-binding domain, shaqkyf class protein | ||||
STRING | AES71105 | 3e-27 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF38986 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01200.1 | 9e-20 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA30827 |