PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA29711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 172aa MW: 19667.9 Da PI: 4.5351 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.1 | 5.3e-09 | 32 | 59 | 19 | 46 |
HHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 19 gilKKAeELSvLCdaevaviifsstgkl 46 g++ K ELS+LC a+ a+i+ ss+++l Tp57577_TGAC_v2_mRNA29711 32 GLFNKVTELSILCKAKTALIVRSSNNEL 59 9*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.657 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.41E-9 | 31 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-7 | 31 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MAFEGNNAAK KENPRKRRID EXXXXXXXXX XGLFNKVTEL SILCKAKTAL IVRSSNNELD 60 ACGYPDCDAV VQQFLTGKVI TEDYDKKKKE EVVEIQRLEY ETIVDKLMEL KEEEKNLEAI 120 NDEAEKSGYG IPDWWNGSID DMSLESLQEF KNSLETLKLN LRLNLDAKKL M* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA29711 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027189143.1 | 5e-46 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2K3L5B9 | 2e-95 | A0A2K3L5B9_TRIPR; Agamous-like mads-box protein agl62-like (Fragment) | ||||
STRING | XP_004497957.1 | 2e-45 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13227 | 10 | 27 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA29711 |