PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA29639
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRF
Protein Properties Length: 350aa    MW: 40170.4 Da    PI: 8.7714
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA29639genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.75.4e-2579122144
                        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                                d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  Tp57577_TGAC_v2_mRNA29639  79 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 122
                                79***************************************997 PP
2QLQ582.8e-201045237
                        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                               +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+k
  Tp57577_TGAC_v2_mRNA29639 10 PFTPSQWQELEHQALIYKYMASGISIPPDLLFTIRK 45
                               9******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.6E-11945IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.6711045IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.5E-151044IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.59679123IPR014977WRC domain
PfamPF088791.2E-2080122IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MNIMNKNKYP FTPSQWQELE HQALIYKYMA SGISIPPDLL FTIRKSYLDS PLSSRLLLNQ  60
PQQNYGWNYL QMGLGRKIDP EPGRCRRTDG KKWRCSKEAY PDSKYCERHM HRGKNRSRKP  120
VEISKTTPTN SNTNNNASTF GISSITKNTP VSITNSSLSF DTQNLHQNYP QNSFMYPHIA  180
TPRSLSTSGI GLSFEDNSAP LFLDNNSCSQ NNTDYRNRYV YGQKEEVDEY AFFKEPSGST  240
TMKHDPWQLT PLTMSSSSSS SSLRQRSFSS LSNDYSSFLQ LQSLNGHSKQ QEQDEPQKTV  300
HRFFDEWPHK ERDQWLDLDD KSSTTQLSIS IPSSAHDFPT FTLRNHHDG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA29639
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0098469e-56AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013463525.10.0growth-regulating factor 1 isoform X2
TrEMBLA0A072VHC90.0A0A072VHC9_MEDTR; Growth-regulating factor-like protein
STRINGXP_004513476.11e-159(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-55growth-regulating factor 5