PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA29008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 248aa MW: 28696.4 Da PI: 8.0865 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 81.4 | 1.6e-25 | 27 | 117 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYneY+k++GF +r+++ +ksk +g t+r+f+C keg+r +k++ + + +raetrtgC a++++++++ gk++v ++ Tp57577_TGAC_v2_mRNA29008 27 DFYNEYSKRIGFGIRREYANKSKVDGVLTSRRFTCFKEGTRIVDKRR-HPTTDPRAETRTGCPARMVISLDRkIGKYKVVDFIA 109 6******************************************9999.99********************9989********** PP FAR1 84 eHnHelap 91 +HnH+l+p Tp57577_TGAC_v2_mRNA29008 110 QHNHPLQP 117 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.2E-21 | 27 | 117 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50811 | 9.098 | 63 | 116 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MCNGQESIAN SEPHLAMKFE YEASAYDFYN EYSKRIGFGI RREYANKSKV DGVLTSRRFT 60 CFKEGTRIVD KRRHPTTDPR AETRTGCPAR MVISLDRKIG KYKVVDFIAQ HNHPLQPPEH 120 VHMIRSHRRI SEAQASQIVL GDESGLRPKD LHEYISKQAG GIETVGFTRE DLKNYLKTKR 180 KQSLKYGEVG ALMMHFKQES ENPSFFYDFQ MDMDEEITNI FWADAQMIND YGYFGDVITF 240 DTTYKTN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA29008 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC157376 | 0.0 | AC157376.2 Medicago truncatula chromosome 7 BAC clone mth2-70d8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024630916.1 | 1e-151 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2K3NJ06 | 0.0 | A0A2K3NJ06_TRIPR; Protein FAR1-related sequence 5-like | ||||
STRING | XP_004503202.1 | 1e-150 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-56 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA29008 |