PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA28977 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 426aa MW: 46070.5 Da PI: 6.5064 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33 | 9.9e-11 | 3 | 23 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 lCr+f+r G C+yGdrC+F H Tp57577_TGAC_v2_mRNA28977 3 DLCRNFQR-GSCQYGDRCRFVH 23 59******.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0047 | 2 | 25 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.6E-8 | 3 | 23 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-8 | 3 | 25 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-5 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.68 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005635 | Cellular Component | nuclear envelope | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MKDLCRNFQR GSCQYGDRCR FVHQQQRKSN NAFGGQQNTT NNPFGFGSAS PSASAPNNNN 60 PFGFGTQNTS HLNAPPRSDS KPNQFQPFEN KWTRSSSKPQ NGPPRQSDNN SQAVNHKCTD 120 PEVCKRQIVE DFQQEKPLWI LTCYGHCKGA PCDILGDISY EELRAAAYED ARNGTSLPVI 180 VEKERTILKS KLVEFDKLLS EPYKMPLNSS LGANANTFSP ATQNYQSNGA NANTFSPATQ 240 NYQSNGANVN AFSPATQNYQ ANGAIANAFL PATQNNGPLA VSSFSQLGAS LNTGFERPSG 300 PQMTTPAQPS TTFGNGGNIF GSNTQNIFGS GISGAQSNPF STPVEFTMFP GSTSQFQQPS 360 TAFNNTSSTT MLPTSAVQLN TSQVENVSVD ESVWLKEKWD PGEIPEVAPP DRFIQDVIGL 420 QSIIN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA28977 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505582.1 | 0.0 | zinc finger CCCH domain-containing protein 16 | ||||
TrEMBL | A0A2K3NWA0 | 0.0 | A0A2K3NWA0_TRIPR; Zinc finger CCCH domain-containing protein 16-like (Fragment) | ||||
STRING | XP_004505582.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4600 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 1e-72 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA28977 |