PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28752
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 309aa    MW: 34434.3 Da    PI: 4.4902
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28752genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.23.2e-1688137154
                        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                                s+ykGVr +k +grW+AeIr p     + +r +lg+f taeeA ka+++ ++++e
  Tp57577_TGAC_v2_mRNA28752  88 SKYKGVRMRK-WGRWAAEIRNPL----KgTREWLGTFNTAEEASKAYENKKLEFE 137
                                89******99.**********74....34*******************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-1088137IPR001471AP2/ERF domain
CDDcd000186.66E-2288136No hitNo description
SuperFamilySSF541714.84E-1688136IPR016177DNA-binding domain
SMARTSM003802.5E-1789161IPR001471AP2/ERF domain
PROSITE profilePS5103218.62489151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2189136IPR001471AP2/ERF domain
PRINTSPR003676.7E-990101IPR001471AP2/ERF domain
PRINTSPR003676.7E-9112128IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGPPPNRKQK LSYVTERTRR LKVVYDDPDA TDSSSDEANY QPMMRKRVVL EFALPDVSVT  60
EKKVDNVLSK SKSSAKTTTT PIVKGKSSKY KGVRMRKWGR WAAEIRNPLK GTREWLGTFN  120
TAEEASKAYE NKKLEFEAIT KKMCKGKKNT SYNSVVTSLN GSKSDTDTSN TTSSLPELVN  180
SVSDVIESGM LSINEAIVES LETNNHLEGE FLEHNVVDIS PLNVVPQSDR NLDTTSRFDL  240
DWLTFDGSGQ GLDDLGCLDD LPYCDFDDNN GPIDIPDFNF DDIIGADESV DDDEIASWFK  300
DFPEKPCL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28752
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003614696.19e-66ethylene-responsive transcription factor ERF118
RefseqXP_013453972.19e-66ethylene-responsive transcription factor ERF118
TrEMBLA0A2K3NKG10.0A0A2K3NKG1_TRIPR; Ethylene-responsive transcription factor erf118-like protein
STRINGAES976543e-65(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-25ERF family protein